##fileformat=VCFv4.2
##reference=NULL
##contig=<ID=chr1,length=248956422>
##contig=<ID=chr2,length=242193529>
##contig=<ID=chr3,length=198295559>
##contig=<ID=chr4,length=190214555>
##contig=<ID=chr5,length=181538259>
##contig=<ID=chr6,length=170805979>
##contig=<ID=chr7,length=159345973>
##contig=<ID=chr8,length=145138636>
##contig=<ID=chr9,length=138394717>
##contig=<ID=chr10,length=133797422>
##contig=<ID=chr11,length=135086622>
##contig=<ID=chr12,length=133275309>
##contig=<ID=chr13,length=114364328>
##contig=<ID=chr14,length=107043718>
##contig=<ID=chr15,length=101991189>
##contig=<ID=chr16,length=90338345>
##contig=<ID=chr17,length=83257441>
##contig=<ID=chr18,length=80373285>
##contig=<ID=chr19,length=58617616>
##contig=<ID=chr20,length=64444167>
##contig=<ID=chr21,length=46709983>
##contig=<ID=chr22,length=50818468>
##contig=<ID=chrX,length=156040895>
##contig=<ID=chrY,length=57227415>
##contig=<ID=chrM,length=16569>
##contig=<ID=chrEBV,length=171823>
##ALT=<ID=INS:ME:SVA,Description="Insertion of SVA element">
##ALT=<ID=INS:ME:LINE1,Description="Insertion of LINE1 element">
##ALT=<ID=INS:ME:ALU,Description="Insertion of ALU element">
##ALT=<ID=INS:ME:HERV-K,Description="Insertion of HERV-K element">
##ALT=<ID=INS:MT,Description="Mitochondrial insertion">
##ALT=<ID=INS:PSDGN,Description="Pseudogene insertion">
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=LowConfident,Description="All filters passed">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Insertion length">
##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate of this variant">
##INFO=<ID=TSD,Number=1,Type=String,Description="Precise Target Site Duplication for bases, if unknown, value will be NULL">
##INFO=<ID=TSDLEN,Number=1,Type=Integer,Description="TSD (dup/del) length, if unknown, then -1">
##INFO=<ID=SUBTYPE,Number=1,Type=String,Description="Subtype based on TSD/PolyA/side-info">
##INFO=<ID=TD_SRC,Number=1,Type=String,Description="Transduction source">
##INFO=<ID=STRAND,Number=1,Type=String,Description="Insertion orientation (+/- for sense/antisense)">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1)">
##INFO=<ID=LCLIP,Number=1,Type=Integer,Description="Number of left clipped reads (aligned to copies)">
##INFO=<ID=RCLIP,Number=1,Type=Integer,Description="Number of right clipped reads (aligned to copies)">
##INFO=<ID=LDISC,Number=1,Type=Integer,Description="Number of left discordant reads (aligned to copies)">
##INFO=<ID=RDISC,Number=1,Type=Integer,Description="Number of right discordant reads (aligned to copies)">
##INFO=<ID=LPOLYA,Number=1,Type=Integer,Description="Number of left polyA reads">
##INFO=<ID=RPOLYA,Number=1,Type=Integer,Description="Number of right polyA reads">
##INFO=<ID=LRAWCLIP,Number=1,Type=Integer,Description="Number of left raw clip reads">
##INFO=<ID=RRAWCLIP,Number=1,Type=Integer,Description="Number of right raw clip reads">
##INFO=<ID=AF_CLIP,Number=1,Type=Integer,Description="Number of effective clip reads (for AF)">
##INFO=<ID=AF_FMAP,Number=1,Type=Integer,Description="Number of effective fully mapped reads (for AF)">
##INFO=<ID=AF_DISC,Number=1,Type=Integer,Description="Number of effective discordant pairs (for AF)">
##INFO=<ID=AF_CONCORDNT,Number=1,Type=Integer,Description="Number of effective concordant pairs (for AF)">
##INFO=<ID=LDRC,Number=1,Type=Integer,Description="Number of left discordant reads are reverse-complementary">
##INFO=<ID=LDNRC,Number=1,Type=Integer,Description="Number of left discordant reads are not reverse-complementary">
##INFO=<ID=RDRC,Number=1,Type=Integer,Description="Number of right discordant reads are reverse-complementary">
##INFO=<ID=RDNRC,Number=1,Type=Integer,Description="Number of right discordant reads are not reverse-complementary">
##INFO=<ID=LCOV,Number=1,Type=Float,Description="Left focal coverage">
##INFO=<ID=RCOV,Number=1,Type=Float,Description="Right focal coverage">
##INFO=<ID=LD_AKR_RC,Number=1,Type=Integer,Description="Number of left discordant anchor reads are reverse-complementary">
##INFO=<ID=LD_AKR_NRC,Number=1,Type=Integer,Description="Number of left discordant anchor reads are not reverse-complementary">
##INFO=<ID=RD_AKR_RC,Number=1,Type=Integer,Description="Number of right discordant anchor reads are reverse-complementary">
##INFO=<ID=RD_AKR_NRC,Number=1,Type=Integer,Description="Number of right discordant anchor reads are not reverse-complementary">
##INFO=<ID=LC_CLUSTER,Number=1,Type=String,Description="Left clip formed cluster in consensus">
##INFO=<ID=RC_CLUSTER,Number=1,Type=String,Description="Right clip formed cluster in consensus">
##INFO=<ID=LD_CLUSTER,Number=1,Type=String,Description="Left discordant formed cluster in consensus">
##INFO=<ID=RD_CLUSTER,Number=1,Type=String,Description="Right discordant formed cluster in consensus">
##INFO=<ID=NINDEL,Number=1,Type=Integer,Description="Number of large indel (or with several mismatches) reads">
##INFO=<ID=CLIP_LEN,Number=1,Type=String,Description="Clip reads length">
##INFO=<ID=INS_INV,Number=1,Type=String,Description="5 prime inversion">
##INFO=<ID=REF_REP,Number=1,Type=String,Description="Fall in reference repeat copy or not">
##INFO=<ID=GENE_INFO,Number=1,Type=String,Description="Fall in gene region">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CommonBrain.markdup.sorted
chr1	24448673	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2700;END=24448673;TSD=NULL;TSDLEN=-1;SUBTYPE=one_half_side_tprt;TD_SRC=not_transduction;STRAND=+;AF=0.1588785046728972;LCLIP=6;RCLIP=0;LDISC=24;RDISC=13;LPOLYA=6;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=45;AF_CLIP=17;AF_FMAP=90;AF_DISC=213;AF_CONCORDNT=655;LDRC=24;LDNRC=0;RDRC=13;RDNRC=0;LCOV=96.135;RCOV=77.905;LD_AKR_RC=0;LD_AKR_NRC=24;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6012:6032;RC_CLUSTER=-1:-1;LD_CLUSTER=3346.0:3582.5;RD_CLUSTER=5400.0:6046.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:10:33:50:72;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_21.7;GENE_INFO=intron:ENSG00000001461.17:NIPAL3	GT	0/1
chr1	37967110	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=28889853;END=37967110;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr6:28895903-28895985;STRAND=+;AF=0.5454545454545454;LCLIP=34;RCLIP=0;LDISC=22;RDISC=30;LPOLYA=11;RPOLYA=0;LRAWCLIP=77;RRAWCLIP=79;AF_CLIP=30;AF_FMAP=25;AF_DISC=146;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=46.055;RCOV=92.865;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=28895903:28895903;RD_CLUSTER=28895985:28895985;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:4:3:6:7:13:16:24:27:63:68:68:69:69:73;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000183431.12:SF3A3	GT	0/1
chr1	74727205	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3656;END=74727223;TSD=+CCGTATTAGTTCATTTTC;TSDLEN=18;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.37404580152671757;LCLIP=36;RCLIP=21;LDISC=31;RDISC=82;LPOLYA=0;RPOLYA=21;LRAWCLIP=58;RRAWCLIP=52;AF_CLIP=49;AF_FMAP=82;AF_DISC=236;AF_CONCORDNT=625;LDRC=1;LDNRC=30;RDRC=4;RDNRC=78;LCOV=62.365;RCOV=115.625;LD_AKR_RC=1;LD_AKR_NRC=30;RD_AKR_RC=79;RD_AKR_NRC=3;LC_CLUSTER=2363:2422;RC_CLUSTER=5983:6019;LD_CLUSTER=5695.5:5990.5;RD_CLUSTER=2420.0:2995.0;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:25:52:21:41:3:58:58:3:67:67:16:16;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000116791.14:CRYZ	GT	0/1
chr1	88507142	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=33730869;END=88507142;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr17:33736919-33737503;STRAND=+;AF=0.4166666666666667;LCLIP=33;RCLIP=0;LDISC=9;RDISC=21;LPOLYA=10;RPOLYA=0;LRAWCLIP=61;RRAWCLIP=58;AF_CLIP=20;AF_FMAP=28;AF_DISC=113;AF_CONCORDNT=98;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=59.645;RCOV=102.68;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=33736919:33736919;RD_CLUSTER=33737503:33737503;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:31:45:50:69:71;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_15.1;GENE_INFO=intron:ENSG00000237505.8:PKN2-AS1	GT	0/1
chr1	101513424	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2303;END=101513435;TSD=+TAGATTTTCTT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.14150943396226415;LCLIP=13;RCLIP=3;LDISC=4;RDISC=24;LPOLYA=0;RPOLYA=3;LRAWCLIP=54;RRAWCLIP=44;AF_CLIP=15;AF_FMAP=91;AF_DISC=230;AF_CONCORDNT=643;LDRC=0;LDNRC=4;RDRC=23;RDNRC=1;LCOV=47.81;RCOV=55.575;LD_AKR_RC=0;LD_AKR_NRC=4;RD_AKR_RC=24;RD_AKR_NRC=0;LC_CLUSTER=3716:3734;RC_CLUSTER=6015:6019;LD_CLUSTER=5798.0:6022.5;RD_CLUSTER=3303.0:3720.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:32:15:33:30:72:72:72:72:28;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr1	191003872	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=966;END=191003888;TSD=+CCACTGCTACCTTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.1588785046728972;LCLIP=16;RCLIP=11;LDISC=19;RDISC=21;LPOLYA=0;RPOLYA=11;LRAWCLIP=53;RRAWCLIP=43;AF_CLIP=17;AF_FMAP=90;AF_DISC=220;AF_CONCORDNT=646;LDRC=0;LDNRC=19;RDRC=14;RDNRC=7;LCOV=79.575;RCOV=79.57;LD_AKR_RC=0;LD_AKR_NRC=19;RD_AKR_RC=20;RD_AKR_NRC=1;LC_CLUSTER=5093:5143;RC_CLUSTER=6019:6059;LD_CLUSTER=5655.5:6068.5;RD_CLUSTER=5059.0:5403.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:42:15:29:25:55:55:55:65:65:65;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_11.2;GENE_INFO=intron:ENSG00000285638.1:ENSG00000285638	GT	0/1
chr2	6658145	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2118;END=6658156;TSD=+GTCAGACTTCT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.23529411764705882;LCLIP=20;RCLIP=4;LDISC=16;RDISC=31;LPOLYA=0;RPOLYA=4;LRAWCLIP=56;RRAWCLIP=45;AF_CLIP=28;AF_FMAP=91;AF_DISC=217;AF_CONCORDNT=649;LDRC=1;LDNRC=15;RDRC=0;RDNRC=31;LCOV=71.12;RCOV=88.75;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=31;RD_AKR_NRC=0;LC_CLUSTER=3904:3962;RC_CLUSTER=6019:6022;LD_CLUSTER=5623.5:6039.5;RD_CLUSTER=3954.0:4273.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:9:49:66:62:7:66:37:37:66:66:8;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr2	10806622	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=26;END=10806649;TSD=+AAAGACAGAAAGAAAGAAAGAAAGAAA;TSDLEN=27;SUBTYPE=one_half_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.25892857142857145;LCLIP=9;RCLIP=5;LDISC=28;RDISC=1;LPOLYA=5;RPOLYA=0;LRAWCLIP=59;RRAWCLIP=49;AF_CLIP=29;AF_FMAP=83;AF_DISC=257;AF_CONCORDNT=630;LDRC=26;LDNRC=2;RDRC=1;RDNRC=0;LCOV=64.69500000000001;RCOV=86.11;LD_AKR_RC=22;LD_AKR_NRC=6;RD_AKR_RC=1;RD_AKR_NRC=0;LC_CLUSTER=6164:6179;RC_CLUSTER=6187:6190;LD_CLUSTER=5378.5:6094.0;RD_CLUSTER=-1:-1;NINDEL=22;CLIP_LEN=5:5:5:23:4:16:42:31:14:17:62:23:30:29:57:51:15:12:39:39:52:56:75;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000143870.13:PDIA6	GT	0/1
chr2	22968127	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6035;END=22968144;TSD=+GAGACTGGGTAATTTAT;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.17699115044247787;LCLIP=14;RCLIP=11;LDISC=25;RDISC=36;LPOLYA=0;RPOLYA=11;LRAWCLIP=51;RRAWCLIP=43;AF_CLIP=20;AF_FMAP=93;AF_DISC=236;AF_CONCORDNT=662;LDRC=4;LDNRC=21;RDRC=2;RDNRC=34;LCOV=103.775;RCOV=114.24000000000001;LD_AKR_RC=5;LD_AKR_NRC=20;RD_AKR_RC=33;RD_AKR_NRC=3;LC_CLUSTER=2:72;RC_CLUSTER=6029:6037;LD_CLUSTER=5585.0:6039.5;RD_CLUSTER=66.0:690.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:70:56:44:6:19:70;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr2	36154094	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1429;END=36154109;TSD=+GAAAGCAACTGTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:134209141~sibling;STRAND=+;AF=0.12371134020618557;LCLIP=6;RCLIP=10;LDISC=24;RDISC=23;LPOLYA=6;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=46;AF_CLIP=12;AF_FMAP=85;AF_DISC=224;AF_CONCORDNT=662;LDRC=22;LDNRC=2;RDRC=23;RDNRC=0;LCOV=85.62;RCOV=83.475;LD_AKR_RC=1;LD_AKR_NRC=23;RD_AKR_RC=23;RD_AKR_NRC=0;LC_CLUSTER=6038:6043;RC_CLUSTER=4561:4619;LD_CLUSTER=4621.0:4962.5;RD_CLUSTER=5600.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:46:59:59:65:74;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr2	55384657	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=77071496;END=55384657;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr15:77077546-77077556;STRAND=+;AF=0.4186046511627907;LCLIP=31;RCLIP=0;LDISC=15;RDISC=7;LPOLYA=7;RPOLYA=0;LRAWCLIP=61;RRAWCLIP=67;AF_CLIP=18;AF_FMAP=25;AF_DISC=101;AF_CONCORDNT=87;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=59.645;RCOV=88.335;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=77077546:77077546;RD_CLUSTER=77077556:77077556;NINDEL=3;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:13:16:14:14:20:21:12:29;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_28.6;GENE_INFO=intron:ENSG00000115355.18:CCDC88A	GT	0/1
chr2	87180577	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=401;END=87180579;TSD=+GA;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:111784839~sibling;STRAND=+;AF=0.14150943396226415;LCLIP=4;RCLIP=11;LDISC=12;RDISC=5;LPOLYA=4;RPOLYA=0;LRAWCLIP=43;RRAWCLIP=40;AF_CLIP=15;AF_FMAP=91;AF_DISC=208;AF_CONCORDNT=668;LDRC=11;LDNRC=1;RDRC=5;RDNRC=0;LCOV=77.13;RCOV=91.3;LD_AKR_RC=0;LD_AKR_NRC=12;RD_AKR_RC=5;RD_AKR_NRC=0;LC_CLUSTER=6060:6062;RC_CLUSTER=5598:5650;LD_CLUSTER=5649.0:5811.0;RD_CLUSTER=5818.0:5959.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:65;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000204745.4:ENSG00000204745	GT	0/1
chr2	115076289	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=21498032;END=115076289;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr19:21504082-21504120;STRAND=+;AF=0.37254901960784315;LCLIP=22;RCLIP=0;LDISC=16;RDISC=11;LPOLYA=9;RPOLYA=0;LRAWCLIP=69;RRAWCLIP=62;AF_CLIP=19;AF_FMAP=32;AF_DISC=116;AF_CONCORDNT=102;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=61.155;RCOV=108.72;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=21504082:21504082;RD_CLUSTER=21504120:21504120;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:33:57:52:54:54:48:58:67:48;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_25.2;GENE_INFO=intron:ENSG00000175497.17:DPP10	GT	0/1
chr2	115619091	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=128688809;END=115619091;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr9:128694859-128696145;STRAND=+;AF=0.4318181818181818;LCLIP=37;RCLIP=0;LDISC=17;RDISC=15;LPOLYA=15;RPOLYA=0;LRAWCLIP=67;RRAWCLIP=63;AF_CLIP=19;AF_FMAP=25;AF_DISC=106;AF_CONCORDNT=92;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=67.195;RCOV=102.68;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=128694859:128694859;RD_CLUSTER=128696145:128696145;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:63:18:55:20:19:18:11;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000175497.17:DPP10	GT	0/1
chr2	128816400	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6014;END=128816414;TSD=+AAAAAAAAAATTTA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.2743362831858407;LCLIP=3;RCLIP=19;LDISC=28;RDISC=5;LPOLYA=3;RPOLYA=1;LRAWCLIP=43;RRAWCLIP=59;AF_CLIP=31;AF_FMAP=82;AF_DISC=214;AF_CONCORDNT=628;LDRC=24;LDNRC=4;RDRC=5;RDNRC=0;LCOV=84.94999999999999;RCOV=30.0;LD_AKR_RC=3;LD_AKR_NRC=25;RD_AKR_RC=5;RD_AKR_NRC=0;LC_CLUSTER=6031:6058;RC_CLUSTER=44:72;LD_CLUSTER=64.0:445.5;RD_CLUSTER=5743.5:6033.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:23:25:26:12:44:56:56:67:68:72:74:74:75:77:117;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_21.8;GENE_INFO=not_gene_region	GT	0/1
chr2	136668562	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=354;END=136668572;TSD=+GAATTTTCTT;TSDLEN=10;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.18803418803418803;LCLIP=20;RCLIP=6;LDISC=15;RDISC=27;LPOLYA=0;RPOLYA=5;LRAWCLIP=51;RRAWCLIP=42;AF_CLIP=22;AF_FMAP=95;AF_DISC=205;AF_CONCORDNT=651;LDRC=0;LDNRC=15;RDRC=25;RDNRC=2;LCOV=73.67500000000001;RCOV=84.515;LD_AKR_RC=0;LD_AKR_NRC=15;RD_AKR_RC=27;RD_AKR_NRC=0;LC_CLUSTER=5668:5725;RC_CLUSTER=6018:6022;LD_CLUSTER=5808.5:5993.0;RD_CLUSTER=5266.0:5687.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:59:18:47:44:44:44:44;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr2	141095338	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=97;END=141095353;TSD=+GATAGGTTCTCTTTA;TSDLEN=15;SUBTYPE=one_half_side_tprt_both;TD_SRC=chr1:118858458~sibling;STRAND=.;AF=0.25210084033613445;LCLIP=12;RCLIP=9;LDISC=1;RDISC=9;LPOLYA=1;RPOLYA=9;LRAWCLIP=54;RRAWCLIP=53;AF_CLIP=30;AF_FMAP=89;AF_DISC=206;AF_CONCORDNT=647;LDRC=0;LDNRC=1;RDRC=0;RDNRC=9;LCOV=89.14500000000001;RCOV=70.06;LD_AKR_RC=0;LD_AKR_NRC=1;RD_AKR_RC=9;RD_AKR_NRC=0;LC_CLUSTER=5851:5870;RC_CLUSTER=6050:6055;LD_CLUSTER=-1:-1;RD_CLUSTER=5953.5:6022.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:7:7:8:10:24:28:23:52:62:79:79:83;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000168702.18:LRP1B	GT	0/1
chr2	146263353	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1505;END=146263356;TSD=-ATT;TSDLEN=3;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.32786885245901637;LCLIP=16;RCLIP=37;LDISC=83;RDISC=25;LPOLYA=16;RPOLYA=1;LRAWCLIP=47;RRAWCLIP=60;AF_CLIP=40;AF_FMAP=82;AF_DISC=249;AF_CONCORDNT=632;LDRC=75;LDNRC=8;RDRC=24;RDNRC=1;LCOV=106.905;RCOV=55.93;LD_AKR_RC=8;LD_AKR_NRC=75;RD_AKR_RC=22;RD_AKR_NRC=3;LC_CLUSTER=6009:6079;RC_CLUSTER=4574:4637;LD_CLUSTER=4628.0:5088.0;RD_CLUSTER=5292.0:6040.0;NINDEL=5;CLIP_LEN=5:5:5:23:4:16:42:31:10:13:30:30:35:35:38:38:38:44:56:59:59:60:73:73:73:73;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr2	155671309	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6026;END=155671336;TSD=+AAAAAAAAAAAAGAAAGAAAGAAAGAA;TSDLEN=27;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2743362831858407;LCLIP=12;RCLIP=10;LDISC=19;RDISC=30;LPOLYA=14;RPOLYA=0;LRAWCLIP=61;RRAWCLIP=52;AF_CLIP=31;AF_FMAP=82;AF_DISC=237;AF_CONCORDNT=630;LDRC=19;LDNRC=0;RDRC=28;RDNRC=2;LCOV=74.72;RCOV=80.2;LD_AKR_RC=0;LD_AKR_NRC=19;RD_AKR_RC=28;RD_AKR_NRC=2;LC_CLUSTER=6023:6038;RC_CLUSTER=12:44;LD_CLUSTER=64.0:267.0;RD_CLUSTER=5708.5:6092.5;NINDEL=8;CLIP_LEN=5:5:5:23:4:16:42:31:32:3:5:6:2:3:4:46:35:38:39:38:83:38:83;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_17.3;GENE_INFO=not_gene_region	GT	0/1
chr2	177811517	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=320;END=177811533;TSD=+AGTCACTCCAATTTTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.20388349514563106;LCLIP=10;RCLIP=13;LDISC=21;RDISC=7;LPOLYA=0;RPOLYA=13;LRAWCLIP=50;RRAWCLIP=49;AF_CLIP=21;AF_FMAP=82;AF_DISC=233;AF_CONCORDNT=634;LDRC=1;LDNRC=20;RDRC=0;RDNRC=7;LCOV=75.295;RCOV=71.27;LD_AKR_RC=2;LD_AKR_NRC=19;RD_AKR_RC=7;RD_AKR_NRC=0;LC_CLUSTER=5850:5902;RC_CLUSTER=6164:6170;LD_CLUSTER=5898.0:6023.0;RD_CLUSTER=5942.0:6008.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:2:8:8:8:8:39:59:71:105;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000128655.19:PDE11A	GT	0/1
chr2	220413501	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5983;END=220413511;TSD=+AACATTTTTT;TSDLEN=10;SUBTYPE=two_side_tprt_both;TD_SRC=chr14:24002003~sibling;STRAND=-;AF=0.18095238095238095;LCLIP=17;RCLIP=2;LDISC=30;RDISC=29;LPOLYA=0;RPOLYA=2;LRAWCLIP=48;RRAWCLIP=43;AF_CLIP=19;AF_FMAP=86;AF_DISC=214;AF_CONCORDNT=646;LDRC=2;LDNRC=28;RDRC=2;RDNRC=27;LCOV=82.78;RCOV=81.78;LD_AKR_RC=1;LD_AKR_NRC=29;RD_AKR_RC=27;RD_AKR_NRC=2;LC_CLUSTER=15:73;RC_CLUSTER=5964:5964;LD_CLUSTER=5585.5:6008.0;RD_CLUSTER=67.0:330.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:75:41:57:12:42;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_21.0;GENE_INFO=intron:ENSG00000239498.1:ENSG00000239498	GT	0/1
chr2	232827198	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=14;END=232827198;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_and_half_transduction;TD_SRC=chr12:66057592~sibling;STRAND=+;AF=0.18;LCLIP=11;RCLIP=0;LDISC=6;RDISC=2;LPOLYA=3;RPOLYA=0;LRAWCLIP=33;RRAWCLIP=29;AF_CLIP=9;AF_FMAP=41;AF_DISC=80;AF_CONCORDNT=176;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=75.40444444444444;RCOV=73.90222222222222;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=6036.0:6037.5;NINDEL=3;CLIP_LEN=34:5:6:19:25:25:41:41:24:29:32:28:48:69:27:10:60:59;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_26.5;GENE_INFO=up_stream:ENSG00000199781.1:Y_RNA/intron:ENSG00000204120.16:GIGYF2	GT	0/1
chr3	12673697	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=146283666;END=12673697;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr4:146289716-146289717;STRAND=+;AF=0.5370370370370371;LCLIP=38;RCLIP=0;LDISC=6;RDISC=7;LPOLYA=18;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=59;AF_CLIP=29;AF_FMAP=25;AF_DISC=107;AF_CONCORDNT=92;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=39.26;RCOV=92.865;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=146289716:146289716;RD_CLUSTER=146289717:146289717;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:31:32:55:20:26:56:51;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=up_stream:ENSG00000233252.1:CRIP1P1	GT	0/1
chr3	38584574	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5985;END=38584591;TSD=+AGAATGAGTAAATAATG;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=chr7:49686219~sibling;STRAND=+;AF=0.3643410852713178;LCLIP=14;RCLIP=38;LDISC=63;RDISC=30;LPOLYA=14;RPOLYA=0;LRAWCLIP=50;RRAWCLIP=52;AF_CLIP=47;AF_FMAP=82;AF_DISC=231;AF_CONCORDNT=626;LDRC=61;LDNRC=2;RDRC=30;RDNRC=0;LCOV=106.85;RCOV=53.42;LD_AKR_RC=2;LD_AKR_NRC=61;RD_AKR_RC=29;RD_AKR_NRC=1;LC_CLUSTER=6016:6062;RC_CLUSTER=11:76;LD_CLUSTER=65.0:551.5;RD_CLUSTER=5682.0:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:19:37:44:47:60:62:66:66:66:66:66;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000183873.18:SCN5A	GT	0/1
chr3	43221180	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=902;END=43221188;TSD=+AAGAGTCA;TSDLEN=8;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.28225806451612906;LCLIP=15;RCLIP=29;LDISC=43;RDISC=24;LPOLYA=15;RPOLYA=0;LRAWCLIP=51;RRAWCLIP=61;AF_CLIP=35;AF_FMAP=89;AF_DISC=240;AF_CONCORDNT=655;LDRC=43;LDNRC=0;RDRC=24;RDNRC=0;LCOV=118.52;RCOV=87.775;LD_AKR_RC=0;LD_AKR_NRC=43;RD_AKR_RC=23;RD_AKR_NRC=1;LC_CLUSTER=6020:6062;RC_CLUSTER=5160:5221;LD_CLUSTER=5224.5:5634.0;RD_CLUSTER=5469.0:6016.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:14:19:19:27:29:29:29:29:29:29:29:29:29:33:36:36:48:71;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr3	49404095	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=138;END=49404095;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_coverage_conflict;TD_SRC=chr7:136107454~sibling;STRAND=.;AF=0.30578512396694213;LCLIP=0;RCLIP=19;LDISC=10;RDISC=0;LPOLYA=0;RPOLYA=0;LRAWCLIP=52;RRAWCLIP=52;AF_CLIP=37;AF_FMAP=84;AF_DISC=219;AF_CONCORDNT=647;LDRC=1;LDNRC=9;RDRC=0;RDNRC=0;LCOV=80.83500000000001;RCOV=95.09;LD_AKR_RC=1;LD_AKR_NRC=9;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=5936:5989;LD_CLUSTER=5912.0:5962.5;RD_CLUSTER=-1:-1;NINDEL=5;CLIP_LEN=5:5:5:23:4:16:42:31:7:11:12:21:26:35:42:45:45:64:69:73:79;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000290318.1:ENSG00000290318/intron:ENSG00000067560.14:RHOA	GT	0/1
chr3	55754539	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5984;END=55754552;TSD=+AAATATGAATTTA;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=chr3:17637186~sibling;STRAND=+;AF=0.26785714285714285;LCLIP=10;RCLIP=23;LDISC=28;RDISC=12;LPOLYA=10;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=60;AF_CLIP=30;AF_FMAP=82;AF_DISC=223;AF_CONCORDNT=631;LDRC=26;LDNRC=2;RDRC=12;RDNRC=0;LCOV=81.735;RCOV=58.769999999999996;LD_AKR_RC=2;LD_AKR_NRC=26;RD_AKR_RC=12;RD_AKR_NRC=0;LC_CLUSTER=6016:6063;RC_CLUSTER=33:71;LD_CLUSTER=66.0:674.0;RD_CLUSTER=5694.0:6044.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:4:10:18:35:35:36:39:42:42:42:42:43:62:62:62:62:70:73;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000187672.15:ERC2	GT	0/1
chr3	59867163	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=916;END=59867177;TSD=+AATCAGCAGAACCA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2;LCLIP=17;RCLIP=14;LDISC=31;RDISC=26;LPOLYA=17;RPOLYA=0;LRAWCLIP=54;RRAWCLIP=49;AF_CLIP=21;AF_FMAP=84;AF_DISC=245;AF_CONCORDNT=650;LDRC=30;LDNRC=1;RDRC=26;RDNRC=0;LCOV=118.295;RCOV=84.67999999999999;LD_AKR_RC=1;LD_AKR_NRC=30;RD_AKR_RC=26;RD_AKR_NRC=0;LC_CLUSTER=5979:6024;RC_CLUSTER=5108:5173;LD_CLUSTER=5162.0:5402.5;RD_CLUSTER=5779.5:6010.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:6:6:28:38:53:53:53;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000189283.10:FHIT	GT	0/1
chr3	80541012	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6008;END=80541026;TSD=+CCCATTCCATTTTC;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.2661290322580645;LCLIP=29;RCLIP=12;LDISC=24;RDISC=46;LPOLYA=0;RPOLYA=12;LRAWCLIP=53;RRAWCLIP=45;AF_CLIP=33;AF_FMAP=91;AF_DISC=221;AF_CONCORDNT=641;LDRC=0;LDNRC=24;RDRC=6;RDNRC=40;LCOV=63.76;RCOV=122.5;LD_AKR_RC=1;LD_AKR_NRC=23;RD_AKR_RC=40;RD_AKR_NRC=6;LC_CLUSTER=12:76;RC_CLUSTER=6017:6020;LD_CLUSTER=5655.5:6091.5;RD_CLUSTER=75.5:665.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:65:19:51:41:11:39:3:3;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_26.5;GENE_INFO=not_gene_region	GT	0/1
chr3	82660969	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1479;END=82660986;TSD=+ATACGCTTTATTTCTTT;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.21367521367521367;LCLIP=18;RCLIP=14;LDISC=27;RDISC=37;LPOLYA=16;RPOLYA=14;LRAWCLIP=54;RRAWCLIP=44;AF_CLIP=25;AF_FMAP=92;AF_DISC=222;AF_CONCORDNT=645;LDRC=1;LDNRC=26;RDRC=2;RDNRC=35;LCOV=93.46;RCOV=103.69;LD_AKR_RC=1;LD_AKR_NRC=26;RD_AKR_RC=36;RD_AKR_NRC=1;LC_CLUSTER=4540:4595;RC_CLUSTER=6017:6019;LD_CLUSTER=5342.0:6053.0;RD_CLUSTER=4343.0:4834.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:15:20:32:58:30:58:63:58:63;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_9.2;GENE_INFO=not_gene_region	GT	0/1
chr3	84384233	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6008;END=84384244;TSD=+TAAAACAGATA;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.14;LCLIP=11;RCLIP=12;LDISC=16;RDISC=25;LPOLYA=11;RPOLYA=0;LRAWCLIP=50;RRAWCLIP=45;AF_CLIP=14;AF_FMAP=86;AF_DISC=219;AF_CONCORDNT=631;LDRC=15;LDNRC=1;RDRC=25;RDNRC=0;LCOV=54.83;RCOV=66.1;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=25;RD_AKR_NRC=0;LC_CLUSTER=6017:6048;RC_CLUSTER=40:73;LD_CLUSTER=692.0:934.0;RD_CLUSTER=5615.0:6082.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:11:58:60:65;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr3	84544122	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=916;END=84544137;TSD=+AAGTATGGCCATTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3543307086614173;LCLIP=33;RCLIP=29;LDISC=56;RDISC=46;LPOLYA=0;RPOLYA=29;LRAWCLIP=67;RRAWCLIP=57;AF_CLIP=45;AF_FMAP=82;AF_DISC=274;AF_CONCORDNT=634;LDRC=0;LDNRC=56;RDRC=41;RDNRC=5;LCOV=67.985;RCOV=89.81;LD_AKR_RC=0;LD_AKR_NRC=56;RD_AKR_RC=44;RD_AKR_NRC=2;LC_CLUSTER=5128:5189;RC_CLUSTER=6016:6044;LD_CLUSTER=5561.5:6092.5;RD_CLUSTER=5003.0:5349.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:50:70:48:62:2:44:7:8:40:55:71:69:25:55:59:69:25:5:48:25;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_17.3;GENE_INFO=not_gene_region	GT	0/1
chr3	85527399	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6018;END=85527418;TSD=+AAAGAAAGAAAAAATTCTG;TSDLEN=19;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.31092436974789917;LCLIP=10;RCLIP=35;LDISC=77;RDISC=26;LPOLYA=10;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=50;AF_CLIP=37;AF_FMAP=82;AF_DISC=278;AF_CONCORDNT=642;LDRC=74;LDNRC=3;RDRC=25;RDNRC=1;LCOV=103.36;RCOV=47.88;LD_AKR_RC=5;LD_AKR_NRC=72;RD_AKR_RC=26;RD_AKR_NRC=0;LC_CLUSTER=6019:6029;RC_CLUSTER=11:71;LD_CLUSTER=66.0:467.0;RD_CLUSTER=5696.0:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:11:14:14:33:37:43:43:43:47:56:62;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000175161.14:CADM2	GT	0/1
chr3	88973180	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1771;END=88973196;TSD=+AGAAGTGGCATGTTTA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.1414141414141414;LCLIP=12;RCLIP=8;LDISC=10;RDISC=33;LPOLYA=0;RPOLYA=8;LRAWCLIP=53;RRAWCLIP=47;AF_CLIP=14;AF_FMAP=85;AF_DISC=224;AF_CONCORDNT=643;LDRC=2;LDNRC=8;RDRC=33;RDNRC=0;LCOV=57.519999999999996;RCOV=82.12;LD_AKR_RC=1;LD_AKR_NRC=9;RD_AKR_RC=33;RD_AKR_NRC=0;LC_CLUSTER=4275:4323;RC_CLUSTER=6038:6046;LD_CLUSTER=5853.5:6000.5;RD_CLUSTER=3851.0:4288.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:49:39:25:10:10:16;INS_INV=5-prime-inversion;REF_REP=Left_is_LINE1_copy_3.3;GENE_INFO=not_gene_region	GT	0/1
chr3	90479383	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1311;END=90479397;TSD=+AAAGAAGTTTCTGA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2;LCLIP=7;RCLIP=21;LDISC=31;RDISC=15;LPOLYA=7;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=49;AF_CLIP=22;AF_FMAP=88;AF_DISC=232;AF_CONCORDNT=647;LDRC=31;LDNRC=0;RDRC=15;RDNRC=0;LCOV=86.215;RCOV=51.635;LD_AKR_RC=0;LD_AKR_NRC=31;RD_AKR_RC=15;RD_AKR_NRC=0;LC_CLUSTER=6038:6056;RC_CLUSTER=4745:4804;LD_CLUSTER=4792.0:5458.5;RD_CLUSTER=5808.0:6003.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:10:10:14:58:58:58:58:69;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr3	110694547	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=108946296;END=110694547;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr1:108952346-108952391;STRAND=+;AF=0.38636363636363635;LCLIP=15;RCLIP=0;LDISC=6;RDISC=8;LPOLYA=6;RPOLYA=0;LRAWCLIP=64;RRAWCLIP=62;AF_CLIP=17;AF_FMAP=27;AF_DISC=114;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=39.26;RCOV=80.03;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=108952346:108952346;RD_CLUSTER=108952391:108952391;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:9:26:42:42:42:44:62:80;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr3	123871865	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5992;END=123871879;TSD=+GAATATAGACACAA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.28125;LCLIP=16;RCLIP=17;LDISC=40;RDISC=54;LPOLYA=16;RPOLYA=0;LRAWCLIP=59;RRAWCLIP=53;AF_CLIP=36;AF_FMAP=92;AF_DISC=254;AF_CONCORDNT=648;LDRC=39;LDNRC=1;RDRC=54;RDNRC=0;LCOV=97.41;RCOV=104.425;LD_AKR_RC=3;LD_AKR_NRC=37;RD_AKR_RC=54;RD_AKR_NRC=0;LC_CLUSTER=6000:6017;RC_CLUSTER=25:71;LD_CLUSTER=76.5:555.5;RD_CLUSTER=5609.0:6057.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:91:78:33:47:91:91:91:78:91:80:30:94:81:78:94;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_22.0;GENE_INFO=intron:ENSG00000065534.20:MYLK	GT	0/1
chr3	144891229	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5273;END=144891241;TSD=+TGGTCATTCTTT;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.22608695652173913;LCLIP=21;RCLIP=19;LDISC=35;RDISC=45;LPOLYA=0;RPOLYA=19;LRAWCLIP=54;RRAWCLIP=46;AF_CLIP=26;AF_FMAP=89;AF_DISC=217;AF_CONCORDNT=649;LDRC=2;LDNRC=33;RDRC=2;RDNRC=43;LCOV=84.745;RCOV=105.755;LD_AKR_RC=3;LD_AKR_NRC=32;RD_AKR_RC=44;RD_AKR_NRC=1;LC_CLUSTER=776:834;RC_CLUSTER=5994:6049;LD_CLUSTER=5367.0:6067.5;RD_CLUSTER=825.0:1204.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:68:45:20:71:5:5:13:5:45:5:50;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr3	151430755	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5998;END=151430767;TSD=+CCCGAAGATCTT;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.14814814814814814;LCLIP=15;RCLIP=9;LDISC=13;RDISC=33;LPOLYA=0;RPOLYA=9;LRAWCLIP=49;RRAWCLIP=42;AF_CLIP=16;AF_FMAP=92;AF_DISC=222;AF_CONCORDNT=653;LDRC=0;LDNRC=13;RDRC=0;RDNRC=33;LCOV=71.675;RCOV=80.345;LD_AKR_RC=0;LD_AKR_NRC=13;RD_AKR_RC=32;RD_AKR_NRC=1;LC_CLUSTER=31:66;RC_CLUSTER=6017:6029;LD_CLUSTER=5216.5:6028.5;RD_CLUSTER=78.5:413.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:61:60:60:66:51:51;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000152580.9:IGSF10/intron:ENSG00000144893.13:MED12L	GT	0/1
chr3	173031182	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1695;END=173031213;TSD=-TGAACTGTACACTTAACACTGGGTAAGATCG;TSDLEN=31;SUBTYPE=one_half_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.234375;LCLIP=9;RCLIP=1;LDISC=0;RDISC=17;LPOLYA=10;RPOLYA=0;LRAWCLIP=55;RRAWCLIP=39;AF_CLIP=30;AF_FMAP=98;AF_DISC=212;AF_CONCORDNT=657;LDRC=0;LDNRC=0;RDRC=0;RDNRC=17;LCOV=79.08;RCOV=105.00999999999999;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=17;LC_CLUSTER=6060:6073;RC_CLUSTER=4378:4378;LD_CLUSTER=-1:-1;RD_CLUSTER=5691.0:6067.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:6:73:21:91:86:65:56:34:58:24:35;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_17.6;GENE_INFO=intron:ENSG00000144962.7:SPATA16	GT	0/1
chr3	174199422	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=186;END=174199438;TSD=+CAAGGTGATCTTTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.15384615384615385;LCLIP=9;RCLIP=12;LDISC=14;RDISC=23;LPOLYA=0;RPOLYA=12;LRAWCLIP=48;RRAWCLIP=41;AF_CLIP=16;AF_FMAP=88;AF_DISC=219;AF_CONCORDNT=650;LDRC=11;LDNRC=3;RDRC=23;RDNRC=0;LCOV=79.845;RCOV=78.825;LD_AKR_RC=0;LD_AKR_NRC=14;RD_AKR_RC=23;RD_AKR_NRC=0;LC_CLUSTER=5902:5919;RC_CLUSTER=6082:6088;LD_CLUSTER=5575.0:6030.5;RD_CLUSTER=5575.0:5908.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:19;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000169760.18:NLGN1	GT	0/1
chr3	175960181	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=883;END=175960196;TSD=+CTTTCTTGGTTTTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.248;LCLIP=25;RCLIP=12;LDISC=40;RDISC=32;LPOLYA=0;RPOLYA=12;LRAWCLIP=53;RRAWCLIP=45;AF_CLIP=31;AF_FMAP=94;AF_DISC=241;AF_CONCORDNT=662;LDRC=1;LDNRC=39;RDRC=0;RDNRC=32;LCOV=90.41499999999999;RCOV=87.20500000000001;LD_AKR_RC=0;LD_AKR_NRC=40;RD_AKR_RC=32;RD_AKR_NRC=0;LC_CLUSTER=5151:5166;RC_CLUSTER=6008:6034;LD_CLUSTER=5661.0:6091.5;RD_CLUSTER=5164.0:5530.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:69:58:59:29:59:29:20:29:29:20;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_24.5;GENE_INFO=not_gene_region	GT	0/1
chr3	181475041	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3144;END=181475057;TSD=+AATCTGGGTGCTCCTA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.22935779816513763;LCLIP=12;RCLIP=24;LDISC=27;RDISC=22;LPOLYA=12;RPOLYA=0;LRAWCLIP=52;RRAWCLIP=61;AF_CLIP=25;AF_FMAP=84;AF_DISC=243;AF_CONCORDNT=645;LDRC=25;LDNRC=2;RDRC=21;RDNRC=1;LCOV=90.37;RCOV=79.485;LD_AKR_RC=3;LD_AKR_NRC=24;RD_AKR_RC=20;RD_AKR_NRC=2;LC_CLUSTER=6009:6050;RC_CLUSTER=2906:2939;LD_CLUSTER=2967.5:3294.5;RD_CLUSTER=5705.5:6060.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:7:12:19:29:29:29:29:29:29:29:33:33:34:34:34:36:38:41:44:44;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_15.0;GENE_INFO=intron:ENSG00000242808.12:SOX2-OT	GT	0/1
chr3	193636369	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1016;END=193636386;TSD=+GGCAATTAACATTTTTT;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.17142857142857143;LCLIP=13;RCLIP=8;LDISC=21;RDISC=35;LPOLYA=0;RPOLYA=8;LRAWCLIP=49;RRAWCLIP=45;AF_CLIP=18;AF_FMAP=87;AF_DISC=216;AF_CONCORDNT=637;LDRC=0;LDNRC=21;RDRC=5;RDNRC=30;LCOV=65.475;RCOV=82.135;LD_AKR_RC=1;LD_AKR_NRC=20;RD_AKR_RC=34;RD_AKR_NRC=1;LC_CLUSTER=5003:5051;RC_CLUSTER=6017:6019;LD_CLUSTER=5788.5:6000.5;RD_CLUSTER=5057.0:5472.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:35:35:38:52;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000198836.11:OPA1	GT	0/1
chr4	10631054	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5973;END=10631070;TSD=+CGGAATCAGCATTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.16216216216216217;LCLIP=11;RCLIP=2;LDISC=16;RDISC=28;LPOLYA=0;RPOLYA=2;LRAWCLIP=53;RRAWCLIP=44;AF_CLIP=18;AF_FMAP=93;AF_DISC=211;AF_CONCORDNT=659;LDRC=0;LDNRC=16;RDRC=2;RDNRC=26;LCOV=68.05000000000001;RCOV=88.765;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=27;RD_AKR_NRC=1;LC_CLUSTER=46:72;RC_CLUSTER=6019:6019;LD_CLUSTER=5880.0:6009.0;RD_CLUSTER=64.0:477.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:27:70:10:74:12:21;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000109684.16:CLNK	GT	0/1
chr4	29320228	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1177;END=29320239;TSD=+CTGTTGATCCT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2018348623853211;LCLIP=11;RCLIP=20;LDISC=45;RDISC=25;LPOLYA=11;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=46;AF_CLIP=22;AF_FMAP=87;AF_DISC=227;AF_CONCORDNT=649;LDRC=0;LDNRC=45;RDRC=25;RDNRC=0;LCOV=77.405;RCOV=87.94;LD_AKR_RC=0;LD_AKR_NRC=45;RD_AKR_RC=25;RD_AKR_NRC=0;LC_CLUSTER=5991:6018;RC_CLUSTER=4841:4898;LD_CLUSTER=4497.5:4882.5;RD_CLUSTER=5729.5:6005.0;NINDEL=5;CLIP_LEN=5:5:5:23:4:16:42:31:10:11:11:11:54:54:54;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_28.7;GENE_INFO=not_gene_region	GT	0/1
chr4	47005765	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=400;END=47005772;TSD=-TTTACCT;TSDLEN=7;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.29914529914529914;LCLIP=31;RCLIP=21;LDISC=39;RDISC=35;LPOLYA=0;RPOLYA=21;LRAWCLIP=61;RRAWCLIP=53;AF_CLIP=35;AF_FMAP=82;AF_DISC=251;AF_CONCORDNT=619;LDRC=0;LDNRC=39;RDRC=2;RDNRC=33;LCOV=63.15;RCOV=68.035;LD_AKR_RC=0;LD_AKR_NRC=39;RD_AKR_RC=33;RD_AKR_NRC=2;LC_CLUSTER=5626:5685;RC_CLUSTER=5995:6026;LD_CLUSTER=5679.0:6026.5;RD_CLUSTER=5679.0:5959.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:36:70:49:32:62:64:42:19:19:19:19:21:20:19:21:21;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000163288.14:GABRB1	GT	0/1
chr4	57260496	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1206;END=57260511;TSD=+TTGAGTAAACTTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.28225806451612906;LCLIP=25;RCLIP=11;LDISC=19;RDISC=38;LPOLYA=0;RPOLYA=11;LRAWCLIP=64;RRAWCLIP=50;AF_CLIP=35;AF_FMAP=89;AF_DISC=221;AF_CONCORDNT=633;LDRC=0;LDNRC=19;RDRC=0;RDNRC=38;LCOV=88.84;RCOV=107.025;LD_AKR_RC=0;LD_AKR_NRC=19;RD_AKR_RC=37;RD_AKR_NRC=1;LC_CLUSTER=4883:4935;RC_CLUSTER=6072:6089;LD_CLUSTER=5633.0:6094.5;RD_CLUSTER=4934.0:5352.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:18:38:65:13:23:6:7:7:44:64:7:6:64:6:64:6:64:64;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_11.0;GENE_INFO=not_gene_region	GT	0/1
chr4	65548212	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=213;END=65548214;TSD=+AA;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:41825379~sibling;STRAND=.;AF=0.36923076923076925;LCLIP=20;RCLIP=33;LDISC=21;RDISC=3;LPOLYA=20;RPOLYA=1;LRAWCLIP=62;RRAWCLIP=68;AF_CLIP=48;AF_FMAP=82;AF_DISC=251;AF_CONCORDNT=622;LDRC=21;LDNRC=0;RDRC=3;RDNRC=0;LCOV=86.81;RCOV=65.15;LD_AKR_RC=0;LD_AKR_NRC=21;RD_AKR_RC=3;RD_AKR_NRC=0;LC_CLUSTER=6014:6054;RC_CLUSTER=5785:5838;LD_CLUSTER=5837.0:5970.5;RD_CLUSTER=6093.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:6:6:8:10:12:14:18:13:34:45:45:45:55:61:61:61:61:61:61:61:61:61;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_30.6;GENE_INFO=intron:ENSG00000145242.14:EPHA5	GT	0/1
chr4	65943352	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2007;END=65943360;TSD=+CTGACTTT;TSDLEN=8;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.15789473684210525;LCLIP=14;RCLIP=5;LDISC=22;RDISC=40;LPOLYA=0;RPOLYA=5;LRAWCLIP=56;RRAWCLIP=46;AF_CLIP=18;AF_FMAP=96;AF_DISC=230;AF_CONCORDNT=643;LDRC=1;LDNRC=21;RDRC=37;RDNRC=3;LCOV=60.225;RCOV=73.19;LD_AKR_RC=1;LD_AKR_NRC=21;RD_AKR_RC=35;RD_AKR_NRC=5;LC_CLUSTER=4019:4058;RC_CLUSTER=6019:6026;LD_CLUSTER=5528.5:6022.0;RD_CLUSTER=3744.5:4040.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:55:5:35:71:62:46:4:71;INS_INV=5-prime-inversion;REF_REP=Right_is_LINE1_copy_30.6;GENE_INFO=not_gene_region	GT	0/1
chr4	79847385	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=611;END=79847387;TSD=+AA;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.1553398058252427;LCLIP=4;RCLIP=12;LDISC=32;RDISC=19;LPOLYA=4;RPOLYA=0;LRAWCLIP=53;RRAWCLIP=49;AF_CLIP=16;AF_FMAP=87;AF_DISC=214;AF_CONCORDNT=641;LDRC=32;LDNRC=0;RDRC=19;RDNRC=0;LCOV=76.15;RCOV=81.18;LD_AKR_RC=1;LD_AKR_NRC=31;RD_AKR_RC=18;RD_AKR_NRC=1;LC_CLUSTER=6017:6021;RC_CLUSTER=5410:5432;LD_CLUSTER=5463.0:5754.0;RD_CLUSTER=5692.5:6048.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:64:21:28:18:41:29:41:51;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000251321.1:PCAT4	GT	0/1
chr4	117411240	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=937;END=117411255;TSD=+TGATGTAAATATTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.21238938053097345;LCLIP=21;RCLIP=8;LDISC=12;RDISC=18;LPOLYA=0;RPOLYA=8;LRAWCLIP=54;RRAWCLIP=43;AF_CLIP=24;AF_FMAP=89;AF_DISC=211;AF_CONCORDNT=642;LDRC=0;LDNRC=12;RDRC=18;RDNRC=0;LCOV=51.33;RCOV=49.235;LD_AKR_RC=1;LD_AKR_NRC=11;RD_AKR_RC=18;RD_AKR_NRC=0;LC_CLUSTER=5082:5123;RC_CLUSTER=6017:6019;LD_CLUSTER=5780.0:5993.5;RD_CLUSTER=4755.5:5119.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:30:38:71:58:31:14:58:58:58;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000236922.10:LINC01378/exon:ENST00000656637.1:4:LINC02263	GT	0/1
chr4	137256170	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1423;END=137256180;TSD=+AAGAAAGCTA;TSDLEN=10;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.17391304347826086;LCLIP=14;RCLIP=12;LDISC=16;RDISC=33;LPOLYA=14;RPOLYA=0;LRAWCLIP=54;RRAWCLIP=46;AF_CLIP=20;AF_FMAP=95;AF_DISC=238;AF_CONCORDNT=656;LDRC=16;LDNRC=0;RDRC=33;RDNRC=0;LCOV=78.75999999999999;RCOV=88.125;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=33;RD_AKR_NRC=0;LC_CLUSTER=5964:5985;RC_CLUSTER=4562:4592;LD_CLUSTER=4644.5:4927.5;RD_CLUSTER=5713.5:6018.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:39:6:71:52:71:71:71:57:52:57:57;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr4	173114443	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3305;END=173114460;TSD=+AAAGAAAAGAATTTCCA;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.24347826086956523;LCLIP=13;RCLIP=22;LDISC=30;RDISC=19;LPOLYA=12;RPOLYA=0;LRAWCLIP=54;RRAWCLIP=51;AF_CLIP=28;AF_FMAP=87;AF_DISC=221;AF_CONCORDNT=655;LDRC=30;LDNRC=0;RDRC=17;RDNRC=2;LCOV=132.49;RCOV=97.60000000000001;LD_AKR_RC=1;LD_AKR_NRC=29;RD_AKR_RC=19;RD_AKR_NRC=0;LC_CLUSTER=6155:6167;RC_CLUSTER=2862:2918;LD_CLUSTER=2926.5:3408.5;RD_CLUSTER=5751.5:6095.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:11:18:19:19:32:49:60:60:64:67;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_18.7;GENE_INFO=intron:ENSG00000245213.7:GALNT7-DT	GT	0/1
chr5	8749402	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1516;END=8749416;TSD=+AAAATTTTTTAATG;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2336448598130841;LCLIP=8;RCLIP=20;LDISC=38;RDISC=21;LPOLYA=8;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=51;AF_CLIP=25;AF_FMAP=82;AF_DISC=243;AF_CONCORDNT=622;LDRC=1;LDNRC=37;RDRC=20;RDNRC=1;LCOV=57.425;RCOV=47.3;LD_AKR_RC=1;LD_AKR_NRC=37;RD_AKR_RC=20;RD_AKR_NRC=1;LC_CLUSTER=6035:6044;RC_CLUSTER=4528:4586;LD_CLUSTER=4118.5:4547.5;RD_CLUSTER=5718.5:6045.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:14:17:17:34:43:57:60:67:68:72;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr5	11391150	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=249;END=11391164;TSD=+AAGAAAGGCAGGAT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.1981981981981982;LCLIP=8;RCLIP=17;LDISC=15;RDISC=15;LPOLYA=8;RPOLYA=0;LRAWCLIP=51;RRAWCLIP=43;AF_CLIP=22;AF_FMAP=89;AF_DISC=204;AF_CONCORDNT=645;LDRC=13;LDNRC=2;RDRC=15;RDNRC=0;LCOV=98.02;RCOV=65.84;LD_AKR_RC=0;LD_AKR_NRC=15;RD_AKR_RC=15;RD_AKR_NRC=0;LC_CLUSTER=6033:6060;RC_CLUSTER=5811:5858;LD_CLUSTER=5824.5:5972.5;RD_CLUSTER=5876.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:62:62:66;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000169862.21:CTNND2	GT	0/1
chr5	33633229	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=775;END=33633243;TSD=+GAAAAGTCTTCTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=chr1:199471044~sibling;STRAND=-;AF=0.2;LCLIP=17;RCLIP=4;LDISC=18;RDISC=37;LPOLYA=0;RPOLYA=4;LRAWCLIP=49;RRAWCLIP=41;AF_CLIP=22;AF_FMAP=88;AF_DISC=217;AF_CONCORDNT=651;LDRC=1;LDNRC=17;RDRC=36;RDNRC=1;LCOV=61.685;RCOV=77.92999999999999;LD_AKR_RC=0;LD_AKR_NRC=18;RD_AKR_RC=36;RD_AKR_NRC=1;LC_CLUSTER=5569:5626;RC_CLUSTER=6043:6054;LD_CLUSTER=5705.0:6041.5;RD_CLUSTER=5275.0:5618.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:11:42:39:42:11;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000151388.11:ADAMTS12	GT	0/1
chr5	68967633	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=568;END=68967648;TSD=+TGTAACATTGATGTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.14678899082568808;LCLIP=11;RCLIP=3;LDISC=8;RDISC=21;LPOLYA=0;RPOLYA=3;LRAWCLIP=50;RRAWCLIP=39;AF_CLIP=16;AF_FMAP=93;AF_DISC=240;AF_CONCORDNT=660;LDRC=1;LDNRC=7;RDRC=0;RDNRC=21;LCOV=55.86;RCOV=73.325;LD_AKR_RC=0;LD_AKR_NRC=8;RD_AKR_RC=21;RD_AKR_NRC=0;LC_CLUSTER=5449:5508;RC_CLUSTER=6017:6017;LD_CLUSTER=5849.5:6002.5;RD_CLUSTER=5509.5:5824.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:74:7:46:67:67:39:64;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000249335.5:ENSG00000249335/intron:ENSG00000250066.1:ENSG00000250066	GT	0/1
chr5	84943854	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=143;END=84943854;TSD=NULL;TSDLEN=-1;SUBTYPE=one_half_side;TD_SRC=not_transduction;STRAND=.;AF=0.1574074074074074;LCLIP=13;RCLIP=0;LDISC=15;RDISC=29;LPOLYA=0;RPOLYA=0;LRAWCLIP=52;RRAWCLIP=47;AF_CLIP=17;AF_FMAP=91;AF_DISC=219;AF_CONCORDNT=637;LDRC=0;LDNRC=15;RDRC=1;RDNRC=28;LCOV=57.165000000000006;RCOV=80.225;LD_AKR_RC=0;LD_AKR_NRC=15;RD_AKR_RC=29;RD_AKR_NRC=0;LC_CLUSTER=5292:5331;RC_CLUSTER=-1:-1;LD_CLUSTER=5649.5:6046.5;RD_CLUSTER=5343.0:5792.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:66:2:36:18:40:18:18:18;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_17.2;GENE_INFO=not_gene_region	GT	0/1
chr5	90154951	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6055;END=90154964;TSD=+GAAAGATGCTTAC;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.31092436974789917;LCLIP=18;RCLIP=29;LDISC=73;RDISC=35;LPOLYA=18;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=60;AF_CLIP=37;AF_FMAP=82;AF_DISC=247;AF_CONCORDNT=632;LDRC=71;LDNRC=2;RDRC=32;RDNRC=3;LCOV=85.3;RCOV=56.620000000000005;LD_AKR_RC=3;LD_AKR_NRC=70;RD_AKR_RC=33;RD_AKR_NRC=2;LC_CLUSTER=6000:6067;RC_CLUSTER=12:74;LD_CLUSTER=64.0:495.0;RD_CLUSTER=5651.5:6042.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:8:8:20:20:30:38:47:60:60:60:60:61:61:62:62:62:62:71;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000248555.7:LINC01339	GT	0/1
chr5	97530702	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=498;END=97530719;TSD=+AAAAAATACATTTTTAG;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.344;LCLIP=30;RCLIP=20;LDISC=54;RDISC=49;LPOLYA=30;RPOLYA=0;LRAWCLIP=60;RRAWCLIP=53;AF_CLIP=43;AF_FMAP=82;AF_DISC=248;AF_CONCORDNT=628;LDRC=0;LDNRC=54;RDRC=46;RDNRC=3;LCOV=82.255;RCOV=66.67500000000001;LD_AKR_RC=1;LD_AKR_NRC=53;RD_AKR_RC=49;RD_AKR_NRC=0;LC_CLUSTER=5981:6031;RC_CLUSTER=5533:5585;LD_CLUSTER=5032.0:5573.5;RD_CLUSTER=5658.5:6028.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:7:12:36:32:32:36:36:71:29:36:62:13:62:62:62:36;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000250331.2:LINC01340	GT	0/1
chr5	113114005	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5347;END=113114018;TSD=+GAGAAGGTTCCTT;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=chr10:125946287~sibling;STRAND=-;AF=0.19444444444444445;LCLIP=13;RCLIP=20;LDISC=28;RDISC=25;LPOLYA=0;RPOLYA=20;LRAWCLIP=49;RRAWCLIP=54;AF_CLIP=21;AF_FMAP=87;AF_DISC=219;AF_CONCORDNT=648;LDRC=1;LDNRC=27;RDRC=0;RDNRC=25;LCOV=76.96000000000001;RCOV=70.64;LD_AKR_RC=1;LD_AKR_NRC=27;RD_AKR_RC=25;RD_AKR_NRC=0;LC_CLUSTER=656:698;RC_CLUSTER=6002:6053;LD_CLUSTER=5322.5:6092.5;RD_CLUSTER=703.5:1157.5;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:10:10:10:10:14:15:65:65:65:69:69:69:70;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_27.9;GENE_INFO=intron:ENSG00000171444.19:MCC	GT	0/1
chr5	125704347	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=832;END=125704352;TSD=+TAAAA;TSDLEN=5;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.11458333333333333;LCLIP=8;RCLIP=11;LDISC=17;RDISC=18;LPOLYA=8;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=43;AF_CLIP=11;AF_FMAP=85;AF_DISC=208;AF_CONCORDNT=651;LDRC=17;LDNRC=0;RDRC=18;RDNRC=0;LCOV=78.82000000000001;RCOV=62.269999999999996;LD_AKR_RC=0;LD_AKR_NRC=17;RD_AKR_RC=17;RD_AKR_NRC=1;LC_CLUSTER=6042:6053;RC_CLUSTER=5221:5280;LD_CLUSTER=5282.0:5728.5;RD_CLUSTER=5705.0:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:52:65:70:70;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_23.4;GENE_INFO=intron:ENSG00000248752.3:ENSG00000248752	GT	0/1
chr5	142199747	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=141626068;END=142199747;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr5:141632118-141632119;STRAND=+;AF=0.3055555555555556;LCLIP=21;RCLIP=0;LDISC=13;RDISC=26;LPOLYA=9;RPOLYA=0;LRAWCLIP=76;RRAWCLIP=58;AF_CLIP=11;AF_FMAP=25;AF_DISC=105;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=70.97;RCOV=26.425;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=141632118:141632118;RD_CLUSTER=141632119:141632119;NINDEL=2;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:8:8;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr5	161008657	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=441;END=161008673;TSD=+TAGTGCTCATATTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=chr3:173031213~sibling;STRAND=-;AF=0.38405797101449274;LCLIP=24;RCLIP=14;LDISC=13;RDISC=54;LPOLYA=0;RPOLYA=14;LRAWCLIP=61;RRAWCLIP=54;AF_CLIP=53;AF_FMAP=85;AF_DISC=235;AF_CONCORDNT=623;LDRC=1;LDNRC=12;RDRC=4;RDNRC=50;LCOV=72.75;RCOV=88.315;LD_AKR_RC=0;LD_AKR_NRC=13;RD_AKR_RC=51;RD_AKR_NRC=3;LC_CLUSTER=5518:5537;RC_CLUSTER=6017:6019;LD_CLUSTER=5872.5:6061.0;RD_CLUSTER=5609.0:6083.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:82:28:68:56:8:6:11:47:67:46:35:35:58:35:58:58;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_26.0;GENE_INFO=not_gene_region	GT	0/1
chr6	13502803	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5979;END=13502817;TSD=+AAATGTAAAAATGA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.3140495867768595;LCLIP=24;RCLIP=20;LDISC=55;RDISC=53;LPOLYA=24;RPOLYA=0;LRAWCLIP=58;RRAWCLIP=54;AF_CLIP=38;AF_FMAP=83;AF_DISC=254;AF_CONCORDNT=629;LDRC=54;LDNRC=1;RDRC=53;RDNRC=0;LCOV=85.03999999999999;RCOV=86.50999999999999;LD_AKR_RC=0;LD_AKR_NRC=55;RD_AKR_RC=52;RD_AKR_NRC=1;LC_CLUSTER=5963:6019;RC_CLUSTER=40:68;LD_CLUSTER=67.0:746.0;RD_CLUSTER=5651.5:6012.0;NINDEL=14;CLIP_LEN=5:5:5:23:4:16:42:31:12:11:23:24:106:48:57:48:76:48:106:48:70:31;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_24.9;GENE_INFO=not_gene_region	GT	0/1
chr6	14432404	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5998;END=14432419;TSD=+CATATTTTATTTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.17475728155339806;LCLIP=5;RCLIP=11;LDISC=21;RDISC=20;LPOLYA=0;RPOLYA=11;LRAWCLIP=48;RRAWCLIP=53;AF_CLIP=18;AF_FMAP=85;AF_DISC=219;AF_CONCORDNT=643;LDRC=1;LDNRC=20;RDRC=0;RDNRC=20;LCOV=83.275;RCOV=58.835;LD_AKR_RC=0;LD_AKR_NRC=21;RD_AKR_RC=20;RD_AKR_NRC=0;LC_CLUSTER=21:60;RC_CLUSTER=6008:6019;LD_CLUSTER=5364.5:6060.0;RD_CLUSTER=75.5:419.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:2:14:14:17:43:47:47:47:32:28:71:71:29:20;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000286277.1:ENSG00000286277	GT	0/1
chr6	16417453	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=96;END=16417453;TSD=+;TSDLEN=0;SUBTYPE=two_side_tprt;TD_SRC=chr5:115421277~sibling;STRAND=-;AF=0.31092436974789917;LCLIP=32;RCLIP=16;LDISC=12;RDISC=28;LPOLYA=0;RPOLYA=16;LRAWCLIP=53;RRAWCLIP=49;AF_CLIP=37;AF_FMAP=82;AF_DISC=215;AF_CONCORDNT=620;LDRC=1;LDNRC=11;RDRC=0;RDNRC=28;LCOV=55.335;RCOV=86.475;LD_AKR_RC=1;LD_AKR_NRC=11;RD_AKR_RC=28;RD_AKR_NRC=0;LC_CLUSTER=5893:5964;RC_CLUSTER=6017:6031;LD_CLUSTER=5954.0:6034.0;RD_CLUSTER=5954.0:6042.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:36:63:70:27:39:12:2:69:2:32;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000124788.19:ATXN1	GT	0/1
chr6	24683759	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=32525953;END=24683759;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr22:32532003-32532328;STRAND=+;AF=0.47540983606557374;LCLIP=37;RCLIP=0;LDISC=17;RDISC=25;LPOLYA=9;RPOLYA=0;LRAWCLIP=66;RRAWCLIP=60;AF_CLIP=29;AF_FMAP=32;AF_DISC=111;AF_CONCORDNT=102;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=45.3;RCOV=101.17;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=32532003:32532003;RD_CLUSTER=32532328:32532328;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:33:81:51:54:77:45:31;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000112304.11:ACOT13	GT	0/1
chr6	32645667	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=430;END=32645669;TSD=-TT;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.25;LCLIP=5;RCLIP=21;LDISC=21;RDISC=13;LPOLYA=6;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=51;AF_CLIP=30;AF_FMAP=90;AF_DISC=205;AF_CONCORDNT=655;LDRC=21;LDNRC=0;RDRC=12;RDNRC=1;LCOV=96.025;RCOV=67.395;LD_AKR_RC=0;LD_AKR_NRC=21;RD_AKR_RC=12;RD_AKR_NRC=1;LC_CLUSTER=6075:6079;RC_CLUSTER=5649:5698;LD_CLUSTER=5704.0:5947.5;RD_CLUSTER=5766.0:5997.0;NINDEL=5;CLIP_LEN=5:5:5:23:4:16:42:31:2:7:17:19:44:44:45:48:54:54:54:54;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=exon:ENST00000460633.1:3:HLA-DQA1	GT	0/1
chr6	46342557	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1151;END=46342569;TSD=+AAAGAAAGAAAG;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.3252032520325203;LCLIP=30;RCLIP=28;LDISC=48;RDISC=61;LPOLYA=30;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=52;AF_CLIP=40;AF_FMAP=83;AF_DISC=241;AF_CONCORDNT=633;LDRC=0;LDNRC=48;RDRC=55;RDNRC=6;LCOV=83.475;RCOV=87.99000000000001;LD_AKR_RC=0;LD_AKR_NRC=48;RD_AKR_RC=58;RD_AKR_NRC=3;LC_CLUSTER=5973:6018;RC_CLUSTER=4867:4925;LD_CLUSTER=4420.0:4914.5;RD_CLUSTER=5625.0:6068.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:18:31:46:16:33:58:10:14:58:10:52:61:52:51:58:58:31:58:61;INS_INV=5-prime-inversion;REF_REP=Right_is_LINE1_copy_25.2;GENE_INFO=intron:ENSG00000172348.16:RCAN2	GT	0/1
chr6	57639621	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=91374407;END=57639621;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr3:91380457-91380462;STRAND=+;AF=0.2857142857142857;LCLIP=20;RCLIP=0;LDISC=44;RDISC=21;LPOLYA=7;RPOLYA=0;LRAWCLIP=64;RRAWCLIP=57;AF_CLIP=10;AF_FMAP=25;AF_DISC=103;AF_CONCORDNT=85;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=54.36;RCOV=125.33;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=91380457:91380457;RD_CLUSTER=91380462:91380462;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:16:16:10:23:29;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_9.1;GENE_INFO=intron:ENSG00000146143.19:PRIM2	GT	0/1
chr6	58220448	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=129;END=58220462;TSD=+GAGCATGTAGTTCT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.17;LCLIP=9;RCLIP=3;LDISC=9;RDISC=12;LPOLYA=0;RPOLYA=3;LRAWCLIP=53;RRAWCLIP=43;AF_CLIP=17;AF_FMAP=83;AF_DISC=228;AF_CONCORDNT=643;LDRC=0;LDNRC=9;RDRC=1;RDNRC=11;LCOV=57.005;RCOV=73.15;LD_AKR_RC=0;LD_AKR_NRC=9;RD_AKR_RC=12;RD_AKR_NRC=0;LC_CLUSTER=5889:5921;RC_CLUSTER=6018:6018;LD_CLUSTER=5940.0:6051.5;RD_CLUSTER=5942.0:5970.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:7:37:37;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000225096.3:ENSG00000225096	GT	0/1
chr6	61307771	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=58426455;END=61307771;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr6:58432505-58432990;STRAND=+;AF=0.37209302325581395;LCLIP=16;RCLIP=0;LDISC=15;RDISC=14;LPOLYA=12;RPOLYA=0;LRAWCLIP=73;RRAWCLIP=58;AF_CLIP=16;AF_FMAP=27;AF_DISC=120;AF_CONCORDNT=83;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=30.2;RCOV=102.68;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=58432505:58432505;RD_CLUSTER=58432990:58432990;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:15:4:59:31:52:64:65:20:45:54:40:29:52:24;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr6	74225859	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3707;END=74225874;TSD=+ATCAATTATATTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:87907371~sibling;STRAND=-;AF=0.20512820512820512;LCLIP=20;RCLIP=6;LDISC=13;RDISC=32;LPOLYA=0;RPOLYA=6;LRAWCLIP=56;RRAWCLIP=41;AF_CLIP=24;AF_FMAP=93;AF_DISC=210;AF_CONCORDNT=652;LDRC=2;LDNRC=11;RDRC=28;RDNRC=4;LCOV=62.144999999999996;RCOV=75.765;LD_AKR_RC=1;LD_AKR_NRC=12;RD_AKR_RC=30;RD_AKR_NRC=2;LC_CLUSTER=2668:2700;RC_CLUSTER=6019:6047;LD_CLUSTER=5461.0:6054.5;RD_CLUSTER=2343.0:2688.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:42:10:73:12:29:29:31:29:10:31:31:31;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_18.0;GENE_INFO=intron:ENSG00000223786.1:ENSG00000223786	GT	0/1
chr6	77270924	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=802;END=77270932;TSD=-ATTTGACT;TSDLEN=8;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.33064516129032256;LCLIP=28;RCLIP=18;LDISC=33;RDISC=54;LPOLYA=0;RPOLYA=18;LRAWCLIP=62;RRAWCLIP=52;AF_CLIP=41;AF_FMAP=83;AF_DISC=269;AF_CONCORDNT=623;LDRC=0;LDNRC=33;RDRC=2;RDNRC=52;LCOV=64.705;RCOV=77.24000000000001;LD_AKR_RC=0;LD_AKR_NRC=33;RD_AKR_RC=52;RD_AKR_NRC=2;LC_CLUSTER=5239:5298;RC_CLUSTER=5986:6041;LD_CLUSTER=5567.5:6028.5;RD_CLUSTER=5285.0:5697.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:70:63:33:41:31:31:66:4:42:2:66:4:15:72:2:4:4:42:66;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr6	87507832	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=53398864;END=87507832;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr20:53404914-53404926;STRAND=+;AF=0.38181818181818183;LCLIP=29;RCLIP=0;LDISC=15;RDISC=21;LPOLYA=14;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=58;AF_CLIP=21;AF_FMAP=34;AF_DISC=103;AF_CONCORDNT=101;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=71.725;RCOV=105.7;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=53404914:53404914;RD_CLUSTER=53404926:53404926;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:12:41:58:53:53:63;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000213204.8:ENSG00000213204/intron:ENSG00000164414.19:SLC35A1	GT	0/1
chr6	94658641	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5890994;END=94658641;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr16:5897044-5897117;STRAND=+;AF=0.3488372093023256;LCLIP=17;RCLIP=0;LDISC=14;RDISC=10;LPOLYA=8;RPOLYA=0;LRAWCLIP=69;RRAWCLIP=61;AF_CLIP=15;AF_FMAP=28;AF_DISC=112;AF_CONCORDNT=91;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=52.095;RCOV=98.905;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=5897044:5897044;RD_CLUSTER=5897117:5897117;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:47:10:70:23:23:23:38:38:68:38;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_23.3;GENE_INFO=intron:ENSG00000289178.2:ENSG00000289178	GT	0/1
chr6	101835883	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1098;END=101835896;TSD=+GGGAATTTTCTTT;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.39705882352941174;LCLIP=42;RCLIP=6;LDISC=7;RDISC=81;LPOLYA=0;RPOLYA=6;LRAWCLIP=75;RRAWCLIP=41;AF_CLIP=54;AF_FMAP=82;AF_DISC=254;AF_CONCORDNT=623;LDRC=0;LDNRC=7;RDRC=4;RDNRC=77;LCOV=48.815;RCOV=99.83500000000001;LD_AKR_RC=0;LD_AKR_NRC=7;RD_AKR_RC=79;RD_AKR_NRC=2;LC_CLUSTER=4928:4996;RC_CLUSTER=6017:6026;LD_CLUSTER=5862.0:6092.5;RD_CLUSTER=4979.0:5434.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:62:43:23:19:14:72:71:46:22:10:68:68:10:45:10:52:68:68:68:49:78:49:73:67:10:13:22:52;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_27.2;GENE_INFO=intron:ENSG00000164418.22:GRIK2	GT	0/1
chr6	115029558	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1639;END=115029570;TSD=+GAAAGAGAGAAA;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.16326530612244897;LCLIP=10;RCLIP=15;LDISC=22;RDISC=14;LPOLYA=10;RPOLYA=1;LRAWCLIP=51;RRAWCLIP=50;AF_CLIP=16;AF_FMAP=82;AF_DISC=227;AF_CONCORDNT=646;LDRC=2;LDNRC=20;RDRC=14;RDNRC=0;LCOV=85.315;RCOV=64.96000000000001;LD_AKR_RC=1;LD_AKR_NRC=21;RD_AKR_RC=14;RD_AKR_NRC=0;LC_CLUSTER=6046:6065;RC_CLUSTER=4426:4479;LD_CLUSTER=3975.0:4474.5;RD_CLUSTER=5883.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:28:39:44:66:66:66:66:72;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_27.0;GENE_INFO=not_gene_region	GT	0/1
chr6	142128963	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5974;END=142128973;TSD=+GCAAACTATT;TSDLEN=10;SUBTYPE=two_side_tprt_both;TD_SRC=chr7:25047718~sibling;STRAND=-;AF=0.26785714285714285;LCLIP=26;RCLIP=18;LDISC=53;RDISC=55;LPOLYA=0;RPOLYA=18;LRAWCLIP=62;RRAWCLIP=55;AF_CLIP=30;AF_FMAP=82;AF_DISC=243;AF_CONCORDNT=628;LDRC=0;LDNRC=53;RDRC=2;RDNRC=53;LCOV=86.055;RCOV=72.685;LD_AKR_RC=2;LD_AKR_NRC=51;RD_AKR_RC=53;RD_AKR_NRC=2;LC_CLUSTER=24:74;RC_CLUSTER=6016:6020;LD_CLUSTER=5381.0:5996.0;RD_CLUSTER=76.0:569.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:56:18:61:13:45:58:58:37:58:66:15:45:40:58:58:45;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_16.3;GENE_INFO=intron:ENSG00000135577.5:NMBR	GT	0/1
chr6	147874652	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2564;END=147874672;TSD=+AAAGAAAAAGTTCATCTGTG;TSDLEN=20;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.21238938053097345;LCLIP=7;RCLIP=17;LDISC=43;RDISC=20;LPOLYA=7;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=48;AF_CLIP=24;AF_FMAP=89;AF_DISC=221;AF_CONCORDNT=650;LDRC=42;LDNRC=1;RDRC=20;RDNRC=0;LCOV=89.685;RCOV=64.18;LD_AKR_RC=0;LD_AKR_NRC=43;RD_AKR_RC=20;RD_AKR_NRC=0;LC_CLUSTER=5965:5994;RC_CLUSTER=3430:3488;LD_CLUSTER=3474.0:3765.0;RD_CLUSTER=5554.0:6020.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:4:4:9:45:47:54;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000227681.5:ENSG00000227681	GT	0/1
chr6	157547704	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5984;END=157547704;TSD=NULL;TSDLEN=-1;SUBTYPE=one_half_side;TD_SRC=chrY:9591800~sibling;STRAND=.;AF=0.3333333333333333;LCLIP=32;RCLIP=0;LDISC=27;RDISC=71;LPOLYA=0;RPOLYA=0;LRAWCLIP=70;RRAWCLIP=41;AF_CLIP=41;AF_FMAP=82;AF_DISC=247;AF_CONCORDNT=628;LDRC=2;LDNRC=25;RDRC=0;RDNRC=71;LCOV=53.239999999999995;RCOV=76.28;LD_AKR_RC=1;LD_AKR_NRC=26;RD_AKR_RC=70;RD_AKR_NRC=1;LC_CLUSTER=20:65;RC_CLUSTER=-1:-1;LD_CLUSTER=5635.5:6011.0;RD_CLUSTER=66.0:564.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:47:69:49:27:16:52:6:10:3:11:13:72:72:40:72:38:54:62:16:38:72:54:72:57:16:40;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000175048.17:ZDHHC14	GT	0/1
chr6	161760224	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3945;END=161760236;TSD=+GAAAACAATGCC;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.41007194244604317;LCLIP=41;RCLIP=23;LDISC=69;RDISC=45;LPOLYA=41;RPOLYA=0;LRAWCLIP=73;RRAWCLIP=62;AF_CLIP=57;AF_FMAP=82;AF_DISC=273;AF_CONCORDNT=626;LDRC=67;LDNRC=2;RDRC=45;RDNRC=0;LCOV=90.825;RCOV=79.52000000000001;LD_AKR_RC=3;LD_AKR_NRC=66;RD_AKR_RC=45;RD_AKR_NRC=0;LC_CLUSTER=6016:6096;RC_CLUSTER=2151:2162;LD_CLUSTER=2168.0:2669.5;RD_CLUSTER=5667.5:6057.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:16:20:20:20:20:25:40:40:47:48:49:51:64:72:72:75:75:76:80:80;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000185345.24:PRKN	GT	0/1
chr6	163393198	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=74266669;END=163393198;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr8:74272719-74272732;STRAND=+;AF=0.6323529411764706;LCLIP=53;RCLIP=0;LDISC=10;RDISC=22;LPOLYA=26;RPOLYA=0;LRAWCLIP=89;RRAWCLIP=76;AF_CLIP=43;AF_FMAP=25;AF_DISC=172;AF_CONCORDNT=89;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=58.135;RCOV=128.35;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=74272719:74272719;RD_CLUSTER=74272732:74272732;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:8:9:13:16:20:23:31:32:37:45:46:48:48:49:54:63:66:71;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr7	8623684	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=37703567;END=8623684;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr5:37709617-37709635;STRAND=+;AF=0.3695652173913043;LCLIP=32;RCLIP=0;LDISC=12;RDISC=11;LPOLYA=17;RPOLYA=0;LRAWCLIP=72;RRAWCLIP=58;AF_CLIP=17;AF_FMAP=29;AF_DISC=110;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=58.89;RCOV=111.74;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=37709617:37709617;RD_CLUSTER=37709635:37709635;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:18:75;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_26.1;GENE_INFO=intron:ENSG00000122584.13:NXPH1	GT	0/1
chr7	13609582	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=51253559;END=13609582;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr5:-1-51259609;STRAND=+;AF=0.2826086956521739;LCLIP=30;RCLIP=0;LDISC=8;RDISC=7;LPOLYA=5;RPOLYA=0;LRAWCLIP=64;RRAWCLIP=59;AF_CLIP=13;AF_FMAP=33;AF_DISC=105;AF_CONCORDNT=98;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=61.91;RCOV=110.23;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=51259609:51259609;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:11:26;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000229618.3:ENSG00000229618	GT	0/1
chr7	58089349	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=0;END=58089349;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_and_half_transduction;TD_SRC=chr7:60959312~sibling;STRAND=+;AF=0.5735294117647058;LCLIP=9;RCLIP=0;LDISC=9;RDISC=53;LPOLYA=3;RPOLYA=0;LRAWCLIP=47;RRAWCLIP=47;AF_CLIP=39;AF_FMAP=29;AF_DISC=87;AF_CONCORDNT=152;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=99.34555555555556;RCOV=184.61;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=-1:-1;NINDEL=4;CLIP_LEN=34:5:6:19:25:25:41:41:24:29:32:28:48:69:27:101:55:91:32:65:65:31:71:47:65:91:3;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr7	62334056	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5984;END=62334070;TSD=+CAACATGCATTCTT;TSDLEN=14;SUBTYPE=one_half_side_tprt_both;TD_SRC=chr3:89460401~sibling;STRAND=-;AF=0.4225352112676056;LCLIP=35;RCLIP=17;LDISC=0;RDISC=56;LPOLYA=0;RPOLYA=17;LRAWCLIP=76;RRAWCLIP=64;AF_CLIP=60;AF_FMAP=82;AF_DISC=278;AF_CONCORDNT=620;LDRC=0;LDNRC=0;RDRC=4;RDNRC=52;LCOV=129.99;RCOV=101.655;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=50;RD_AKR_NRC=6;LC_CLUSTER=2:77;RC_CLUSTER=6016:6031;LD_CLUSTER=-1:-1;RD_CLUSTER=66.0:538.0;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:8:10:11:12:13:48:48:45:64:64:64:47:76:77:77:45:93:107;INS_INV=5-prime-inversion;REF_REP=Right_is_LINE1_copy_28.9;GENE_INFO=not_gene_region	GT	0/1
chr7	63032551	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1656;END=63032569;TSD=+AGAAATAGAGCTAGAAGT;TSDLEN=18;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.24074074074074073;LCLIP=19;RCLIP=23;LDISC=52;RDISC=33;LPOLYA=19;RPOLYA=0;LRAWCLIP=55;RRAWCLIP=59;AF_CLIP=26;AF_FMAP=82;AF_DISC=256;AF_CONCORDNT=637;LDRC=1;LDNRC=51;RDRC=33;RDNRC=0;LCOV=78.275;RCOV=65.24000000000001;LD_AKR_RC=0;LD_AKR_NRC=52;RD_AKR_RC=33;RD_AKR_NRC=0;LC_CLUSTER=6016:6040;RC_CLUSTER=4384:4444;LD_CLUSTER=4067.0:4430.5;RD_CLUSTER=5543.0:6031.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:12:14:21:29:40:41:41:41:41:41:55:60:63:68:69:69:69;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_24.6;GENE_INFO=not_gene_region	GT	0/1
chr7	67126184	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5983;END=67126199;TSD=+ATGGATGAGAGTTCT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chrX:152241928~sibling;STRAND=-;AF=0.18032786885245902;LCLIP=21;RCLIP=8;LDISC=28;RDISC=33;LPOLYA=0;RPOLYA=8;LRAWCLIP=53;RRAWCLIP=47;AF_CLIP=22;AF_FMAP=100;AF_DISC=231;AF_CONCORDNT=659;LDRC=1;LDNRC=27;RDRC=0;RDNRC=33;LCOV=78.25;RCOV=101.04499999999999;LD_AKR_RC=3;LD_AKR_NRC=25;RD_AKR_RC=33;RD_AKR_NRC=0;LC_CLUSTER=12:71;RC_CLUSTER=5983:6018;LD_CLUSTER=5563.0:6008.0;RD_CLUSTER=67.0:526.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:69:17:40:50:35:9:12:24:39:11;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_14.9;GENE_INFO=intron:ENSG00000198874.14:TYW1	GT	0/1
chr7	67962933	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=63830076;END=67962933;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr7:63836126-63836130;STRAND=+;AF=0.6212121212121212;LCLIP=54;RCLIP=0;LDISC=23;RDISC=19;LPOLYA=14;RPOLYA=0;LRAWCLIP=64;RRAWCLIP=66;AF_CLIP=41;AF_FMAP=25;AF_DISC=103;AF_CONCORDNT=84;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=47.565;RCOV=93.62;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=63836126:63836126;RD_CLUSTER=63836130:63836130;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:9:10:11:13:15:19:27:28:36:43:43:63:74;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr7	85415420	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1711;END=85415435;TSD=+AAAAAGCAAATGTAT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2682926829268293;LCLIP=7;RCLIP=26;LDISC=53;RDISC=13;LPOLYA=7;RPOLYA=0;LRAWCLIP=45;RRAWCLIP=63;AF_CLIP=33;AF_FMAP=90;AF_DISC=254;AF_CONCORDNT=662;LDRC=0;LDNRC=53;RDRC=13;RDNRC=0;LCOV=102.575;RCOV=54.665000000000006;LD_AKR_RC=2;LD_AKR_NRC=51;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6026:6036;RC_CLUSTER=4325:4381;LD_CLUSTER=3805.5:4370.5;RD_CLUSTER=5574.0:6038.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:8:16:40:40:40:45:45:45:45:60:60:67:71:72:72:72:72:72:72:72:72;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr7	102378887	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=67298030;END=102378887;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr7:67304080-67304333;STRAND=+;AF=0.358974358974359;LCLIP=12;RCLIP=0;LDISC=26;RDISC=19;LPOLYA=3;RPOLYA=0;LRAWCLIP=71;RRAWCLIP=60;AF_CLIP=14;AF_FMAP=25;AF_DISC=112;AF_CONCORDNT=79;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=21.895;RCOV=73.235;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=67304080:67304080;RD_CLUSTER=67304333:67304333;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:23:39:21:23:23:37:48:9:9:14;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000290830.1:ENSG00000290830/intron:ENSG00000128563.13:PRKRIP1	GT	0/1
chr7	103703630	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=894;END=103703647;TSD=+GAAATTTAAAACCAGAA;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.24324324324324326;LCLIP=10;RCLIP=25;LDISC=32;RDISC=31;LPOLYA=10;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=62;AF_CLIP=27;AF_FMAP=84;AF_DISC=254;AF_CONCORDNT=648;LDRC=1;LDNRC=31;RDRC=30;RDNRC=1;LCOV=92.24000000000001;RCOV=83.215;LD_AKR_RC=0;LD_AKR_NRC=32;RD_AKR_RC=31;RD_AKR_NRC=0;LC_CLUSTER=6023:6043;RC_CLUSTER=5149:5211;LD_CLUSTER=4743.0:5197.5;RD_CLUSTER=5666.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:23:24:25:32:42:42:46:45:45:51:55:62:62:62:62:62:62:62:62:62:69;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000189056.15:RELN	GT	0/1
chr7	108188804	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6039;END=108188819;TSD=+TAAATTTTAGTGGAA;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.16037735849056603;LCLIP=1;RCLIP=14;LDISC=24;RDISC=13;LPOLYA=1;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=48;AF_CLIP=17;AF_FMAP=89;AF_DISC=204;AF_CONCORDNT=643;LDRC=23;LDNRC=1;RDRC=13;RDNRC=0;LCOV=77.77000000000001;RCOV=78.33500000000001;LD_AKR_RC=0;LD_AKR_NRC=24;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6053:6053;RC_CLUSTER=14:73;LD_CLUSTER=77.5:322.0;RD_CLUSTER=5732.5:6014.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:21:21:37:38:40:48:58:73;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000091129.22:NRCAM	GT	0/1
chr7	113871164	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=526;END=113871180;TSD=+AAAAAAAAGAAGAAAA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2719298245614035;LCLIP=23;RCLIP=6;LDISC=22;RDISC=48;LPOLYA=23;RPOLYA=0;LRAWCLIP=57;RRAWCLIP=55;AF_CLIP=31;AF_FMAP=83;AF_DISC=263;AF_CONCORDNT=643;LDRC=2;LDNRC=20;RDRC=48;RDNRC=0;LCOV=61.269999999999996;RCOV=62.39;LD_AKR_RC=0;LD_AKR_NRC=22;RD_AKR_RC=48;RD_AKR_NRC=0;LC_CLUSTER=6017:6042;RC_CLUSTER=5516:5524;LD_CLUSTER=5147.5:5953.5;RD_CLUSTER=5662.5:6096.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:7:8:25:9:5:6:47:6:11:47:47:47:47:47;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_1.6;GENE_INFO=not_gene_region	GT	0/1
chr7	143121560	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5985;END=143121571;TSD=+AAAAATAGTTA;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=chr1:223317841~sibling;STRAND=+;AF=0.17475728155339806;LCLIP=10;RCLIP=14;LDISC=30;RDISC=24;LPOLYA=10;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=45;AF_CLIP=18;AF_FMAP=85;AF_DISC=216;AF_CONCORDNT=642;LDRC=29;LDNRC=1;RDRC=23;RDNRC=1;LCOV=83.445;RCOV=82.005;LD_AKR_RC=1;LD_AKR_NRC=29;RD_AKR_RC=23;RD_AKR_NRC=1;LC_CLUSTER=5988:6017;RC_CLUSTER=13:66;LD_CLUSTER=65.0:543.5;RD_CLUSTER=5518.0:6011.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:38:56:56:56:56:70;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr7	152380285	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=10425277;END=152380285;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr21:10431327-10431765;STRAND=+;AF=0.3181818181818182;LCLIP=33;RCLIP=0;LDISC=80;RDISC=22;LPOLYA=10;RPOLYA=0;LRAWCLIP=70;RRAWCLIP=71;AF_CLIP=14;AF_FMAP=30;AF_DISC=124;AF_CONCORDNT=140;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=74.745;RCOV=175.915;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=10431327:10431327;RD_CLUSTER=10431765:10431765;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:8;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000055609.21:KMT2C	GT	0/1
chr8	5971760	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=588;END=5971765;TSD=-AGTCT;TSDLEN=5;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.2440944881889764;LCLIP=30;RCLIP=10;LDISC=27;RDISC=63;LPOLYA=0;RPOLYA=10;LRAWCLIP=59;RRAWCLIP=48;AF_CLIP=31;AF_FMAP=96;AF_DISC=252;AF_CONCORDNT=653;LDRC=1;LDNRC=26;RDRC=0;RDNRC=63;LCOV=70.125;RCOV=102.465;LD_AKR_RC=1;LD_AKR_NRC=26;RD_AKR_RC=63;RD_AKR_NRC=0;LC_CLUSTER=5441:5498;RC_CLUSTER=5977:6029;LD_CLUSTER=5718.0:5997.5;RD_CLUSTER=5487.0:5766.0;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:20:31:34:25:24:23:71:21:38:71:38:23:71:21:66;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr8	25069030	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2849;END=25069034;TSD=-AAAT;TSDLEN=4;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.39705882352941174;LCLIP=46;RCLIP=18;LDISC=31;RDISC=63;LPOLYA=0;RPOLYA=18;LRAWCLIP=70;RRAWCLIP=44;AF_CLIP=54;AF_FMAP=82;AF_DISC=234;AF_CONCORDNT=620;LDRC=3;LDNRC=28;RDRC=2;RDNRC=61;LCOV=60.629999999999995;RCOV=85.875;LD_AKR_RC=2;LD_AKR_NRC=29;RD_AKR_RC=61;RD_AKR_NRC=2;LC_CLUSTER=3228:3282;RC_CLUSTER=6019:6077;LD_CLUSTER=5723.5:6059.5;RD_CLUSTER=3278.0:3657.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:19:27:25:15:31:45:41:40:44:15:46:24:24:65:44:44:13:3:33:3:3:61:40:40:40:40;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr8	35387362	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1862;END=35387375;TSD=+AAAAAAAAAAAAA;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.20388349514563106;LCLIP=6;RCLIP=6;LDISC=15;RDISC=14;LPOLYA=6;RPOLYA=3;LRAWCLIP=48;RRAWCLIP=54;AF_CLIP=21;AF_FMAP=82;AF_DISC=215;AF_CONCORDNT=643;LDRC=0;LDNRC=15;RDRC=14;RDNRC=0;LCOV=68.765;RCOV=62.730000000000004;LD_AKR_RC=0;LD_AKR_NRC=15;RD_AKR_RC=14;RD_AKR_NRC=0;LC_CLUSTER=6017:6042;RC_CLUSTER=4180:4188;LD_CLUSTER=3905.0:4187.5;RD_CLUSTER=5572.0:6068.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:19:19:19:46:55:61:61:66:66:66:69:69:69;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000156687.11:UNC5D	GT	0/1
chr8	56249333	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6039;END=56249347;TSD=+AAAAAAAAAAAAAA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.10869565217391304;LCLIP=2;RCLIP=7;LDISC=9;RDISC=10;LPOLYA=2;RPOLYA=0;LRAWCLIP=51;RRAWCLIP=50;AF_CLIP=10;AF_FMAP=82;AF_DISC=218;AF_CONCORDNT=633;LDRC=8;LDNRC=1;RDRC=10;RDNRC=0;LCOV=65.32;RCOV=45.045;LD_AKR_RC=0;LD_AKR_NRC=9;RD_AKR_RC=10;RD_AKR_NRC=0;LC_CLUSTER=6052:6052;RC_CLUSTER=13:33;LD_CLUSTER=65.0:404.0;RD_CLUSTER=5813.5:6053.5;NINDEL=8;CLIP_LEN=5:5:5:23:4:16:42:31:3:4:37:40:114;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_26.1;GENE_INFO=not_gene_region	GT	0/1
chr8	71486985	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5961;END=71487001;TSD=+TCTCTCTTAAATTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.23275862068965517;LCLIP=20;RCLIP=19;LDISC=25;RDISC=29;LPOLYA=0;RPOLYA=19;LRAWCLIP=54;RRAWCLIP=51;AF_CLIP=27;AF_FMAP=89;AF_DISC=228;AF_CONCORDNT=640;LDRC=0;LDNRC=25;RDRC=1;RDNRC=28;LCOV=86.265;RCOV=97.22;LD_AKR_RC=0;LD_AKR_NRC=25;RD_AKR_RC=28;RD_AKR_NRC=1;LC_CLUSTER=15:73;RC_CLUSTER=5946:5976;LD_CLUSTER=5613.0:6000.5;RD_CLUSTER=79.5:394.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:9:8:14:41:51:63:62:8:45:62;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000104313.20:EYA1	GT	0/1
chr8	86302811	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=86;END=86302814;TSD=-TCT;TSDLEN=3;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.22641509433962265;LCLIP=17;RCLIP=17;LDISC=5;RDISC=16;LPOLYA=17;RPOLYA=0;LRAWCLIP=59;RRAWCLIP=50;AF_CLIP=24;AF_FMAP=82;AF_DISC=241;AF_CONCORDNT=640;LDRC=5;LDNRC=0;RDRC=16;RDNRC=0;LCOV=78.41;RCOV=69.745;LD_AKR_RC=0;LD_AKR_NRC=5;RD_AKR_RC=16;RD_AKR_NRC=0;LC_CLUSTER=6011:6024;RC_CLUSTER=5938:5993;LD_CLUSTER=5989.0:6000.5;RD_CLUSTER=5989.0:6021.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:10:12:14:25:28:51:53:50:54;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000164893.9:SLC7A13	GT	0/1
chr8	114776335	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2120;END=114776351;TSD=+TATGAGCAATTTTTTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3880597014925373;LCLIP=47;RCLIP=15;LDISC=45;RDISC=77;LPOLYA=0;RPOLYA=15;LRAWCLIP=77;RRAWCLIP=56;AF_CLIP=52;AF_FMAP=82;AF_DISC=295;AF_CONCORDNT=627;LDRC=2;LDNRC=43;RDRC=2;RDNRC=75;LCOV=67.785;RCOV=96.935;LD_AKR_RC=2;LD_AKR_NRC=43;RD_AKR_RC=75;RD_AKR_NRC=2;LC_CLUSTER=3897:3957;RC_CLUSTER=5971:6017;LD_CLUSTER=5614.5:6009.5;RD_CLUSTER=3945.0:4686.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:56:59:13:15:58:3:52:17:28:17:28:70:18:28:70:18:44:69:18:52:33:18:36:36:15:36:3:18:18:36:28:44;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_16.0;GENE_INFO=not_gene_region	GT	0/1
chr8	114869540	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=298;END=114869552;TSD=+AAAAACATAAGT;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2903225806451613;LCLIP=11;RCLIP=32;LDISC=24;RDISC=12;LPOLYA=11;RPOLYA=0;LRAWCLIP=44;RRAWCLIP=63;AF_CLIP=36;AF_FMAP=88;AF_DISC=226;AF_CONCORDNT=656;LDRC=24;LDNRC=0;RDRC=12;RDNRC=0;LCOV=105.73;RCOV=67.96;LD_AKR_RC=0;LD_AKR_NRC=24;RD_AKR_RC=12;RD_AKR_NRC=0;LC_CLUSTER=6017:6066;RC_CLUSTER=5768:5790;LD_CLUSTER=5818.0:5991.0;RD_CLUSTER=5829.5:6041.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:12:13:14:14:14:14:14:22:24:25:25:25:52:52:52:52:52:52:52:58:63:63:66:66;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr8	127521584	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=609;END=127521605;TSD=+AAATAAATGGTAAGCTATATA;TSDLEN=21;SUBTYPE=one_half_side_tprt_both;TD_SRC=chr3:111555260~sibling;STRAND=+;AF=0.32231404958677684;LCLIP=6;RCLIP=28;LDISC=49;RDISC=1;LPOLYA=6;RPOLYA=0;LRAWCLIP=56;RRAWCLIP=52;AF_CLIP=39;AF_FMAP=82;AF_DISC=227;AF_CONCORDNT=624;LDRC=1;LDNRC=48;RDRC=0;RDNRC=1;LCOV=70.38;RCOV=77.74;LD_AKR_RC=1;LD_AKR_NRC=48;RD_AKR_RC=1;RD_AKR_NRC=0;LC_CLUSTER=6099:6099;RC_CLUSTER=5901:5959;LD_CLUSTER=5441.0:5950.0;RD_CLUSTER=-1:-1;NINDEL=5;CLIP_LEN=5:5:5:23:4:16:42:31:19:20:49:77:86:28:62:41:73:100:58:6;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_29.4;GENE_INFO=not_gene_region	GT	0/1
chr8	130535525	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=182329236;END=130535525;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr4:182335286-182335309;STRAND=+;AF=0.45161290322580644;LCLIP=27;RCLIP=0;LDISC=13;RDISC=15;LPOLYA=3;RPOLYA=0;LRAWCLIP=69;RRAWCLIP=61;AF_CLIP=28;AF_FMAP=34;AF_DISC=124;AF_CONCORDNT=102;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=63.42;RCOV=129.105;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=182335286:182335286;RD_CLUSTER=182335309:182335309;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:4:58:64:65:2:18:93:36:26:53;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr8	133959980	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=754;END=133959999;TSD=+AAGAATATGTGTCTGTCTG;TSDLEN=19;SUBTYPE=two_side_tprt_both;TD_SRC=chr18:59403750~sibling;STRAND=.;AF=0.14563106796116504;LCLIP=12;RCLIP=12;LDISC=18;RDISC=2;LPOLYA=12;RPOLYA=1;LRAWCLIP=55;RRAWCLIP=43;AF_CLIP=15;AF_FMAP=88;AF_DISC=220;AF_CONCORDNT=651;LDRC=18;LDNRC=0;RDRC=1;RDNRC=1;LCOV=91.96000000000001;RCOV=70.015;LD_AKR_RC=0;LD_AKR_NRC=18;RD_AKR_RC=1;RD_AKR_NRC=1;LC_CLUSTER=6017:6054;RC_CLUSTER=5235:5282;LD_CLUSTER=5296.0:5808.5;RD_CLUSTER=5868.0:5954.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:none;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr9	5491406	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5975;END=5491418;TSD=+AAAACACTTAGC;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=chr12:66057592~sibling;STRAND=+;AF=0.09090909090909091;LCLIP=4;RCLIP=6;LDISC=34;RDISC=15;LPOLYA=4;RPOLYA=0;LRAWCLIP=45;RRAWCLIP=46;AF_CLIP=9;AF_FMAP=90;AF_DISC=236;AF_CONCORDNT=639;LDRC=30;LDNRC=4;RDRC=14;RDNRC=1;LCOV=57.995000000000005;RCOV=55.629999999999995;LD_AKR_RC=0;LD_AKR_NRC=34;RD_AKR_RC=14;RD_AKR_NRC=1;LC_CLUSTER=6033:6033;RC_CLUSTER=12:19;LD_CLUSTER=75.5:443.0;RD_CLUSTER=5879.5:6094.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:19:46;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_4.3;GENE_INFO=intron:ENSG00000286162.4:ENSG00000286162	GT	0/1
chr9	32092742	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1274;END=32092750;TSD=+TTCTTTTT;TSDLEN=8;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.205607476635514;LCLIP=21;RCLIP=2;LDISC=13;RDISC=26;LPOLYA=1;RPOLYA=2;LRAWCLIP=61;RRAWCLIP=52;AF_CLIP=22;AF_FMAP=85;AF_DISC=239;AF_CONCORDNT=632;LDRC=0;LDNRC=13;RDRC=0;RDNRC=26;LCOV=66.265;RCOV=78.625;LD_AKR_RC=0;LD_AKR_NRC=13;RD_AKR_RC=26;RD_AKR_NRC=0;LC_CLUSTER=4749:4801;RC_CLUSTER=6023:6023;LD_CLUSTER=5800.5:6071.5;RD_CLUSTER=4797.0:5016.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:65:38:2:63:13:48:48;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr9	32463889	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=146;END=32463896;TSD=-AAATAAA;TSDLEN=7;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.36923076923076925;LCLIP=33;RCLIP=34;LDISC=32;RDISC=53;LPOLYA=0;RPOLYA=34;LRAWCLIP=57;RRAWCLIP=59;AF_CLIP=48;AF_FMAP=82;AF_DISC=249;AF_CONCORDNT=632;LDRC=0;LDNRC=32;RDRC=1;RDNRC=52;LCOV=70.32;RCOV=94.19;LD_AKR_RC=0;LD_AKR_NRC=32;RD_AKR_RC=51;RD_AKR_NRC=2;LC_CLUSTER=5873:5932;RC_CLUSTER=5974:6019;LD_CLUSTER=5925.0:6015.0;RD_CLUSTER=5925.0:6019.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:53:4:61:30:21:56:56:43:56:56:56:56:56:32;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000107201.11:DDX58/intron:ENSG00000288684.1:ENSG00000288684	GT	0/1
chr9	40887607	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=60536568;END=40887607;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr9:60542618-60543073;STRAND=+;AF=0.275;LCLIP=19;RCLIP=0;LDISC=14;RDISC=16;LPOLYA=4;RPOLYA=0;LRAWCLIP=76;RRAWCLIP=54;AF_CLIP=22;AF_FMAP=58;AF_DISC=119;AF_CONCORDNT=152;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=120.045;RCOV=200.075;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=60542618:60542618;RD_CLUSTER=60543073:60543073;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:18:22:18:17:27:38:15:5:23:39:14:20:28:7:35;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr9	41047840	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=730;END=41047841;TSD=-C;TSDLEN=1;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.3194444444444444;LCLIP=32;RCLIP=12;LDISC=28;RDISC=33;LPOLYA=32;RPOLYA=12;LRAWCLIP=48;RRAWCLIP=51;AF_CLIP=46;AF_FMAP=98;AF_DISC=218;AF_CONCORDNT=679;LDRC=0;LDNRC=28;RDRC=3;RDNRC=30;LCOV=153.37;RCOV=150.72;LD_AKR_RC=0;LD_AKR_NRC=28;RD_AKR_RC=31;RD_AKR_NRC=2;LC_CLUSTER=5268:5320;RC_CLUSTER=5962:5998;LD_CLUSTER=5779.0:6015.0;RD_CLUSTER=5317.0:5749.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:5:5:9:11:14:21:25:29:54:18;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000277778.4:PGM5P2/intron:ENSG00000291075.1:ENSG00000291075/intron:ENSG00000290923.1:PGM5P2/intron:ENSG00000276291.8:FRG1HP	GT	0/1
chr9	42341584	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=39578057;END=42341584;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr9:39584107-39584750;STRAND=+;AF=0.3709677419354839;LCLIP=30;RCLIP=0;LDISC=9;RDISC=9;LPOLYA=16;RPOLYA=0;LRAWCLIP=71;RRAWCLIP=55;AF_CLIP=23;AF_FMAP=39;AF_DISC=99;AF_CONCORDNT=132;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=86.07;RCOV=143.45;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=39584107:39584107;RD_CLUSTER=39584750:39584750;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:16:28:105:87:105:89:105:119;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000275649.1:ENSG00000275649	GT	0/1
chr9	63898518	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=947;END=63898533;TSD=+AGAGATGTAATTTTA;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.23863636363636365;LCLIP=26;RCLIP=4;LDISC=10;RDISC=14;LPOLYA=0;RPOLYA=4;LRAWCLIP=60;RRAWCLIP=60;AF_CLIP=42;AF_FMAP=134;AF_DISC=224;AF_CONCORDNT=767;LDRC=0;LDNRC=10;RDRC=8;RDNRC=6;LCOV=159.29500000000002;RCOV=258.84000000000003;LD_AKR_RC=0;LD_AKR_NRC=10;RD_AKR_RC=13;RD_AKR_NRC=1;LC_CLUSTER=5150:5214;RC_CLUSTER=6095:6097;LD_CLUSTER=5531.0:5951.0;RD_CLUSTER=4951.0:5428.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:41:52:9:10:60:4:2:69:67:79:31:79:43:49;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr9	93211226	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=142216096;END=93211226;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr8:142222146-142222153;STRAND=+;AF=0.8169014084507042;LCLIP=17;RCLIP=0;LDISC=8;RDISC=9;LPOLYA=3;RPOLYA=0;LRAWCLIP=75;RRAWCLIP=79;AF_CLIP=116;AF_FMAP=26;AF_DISC=111;AF_CONCORDNT=101;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=79.275;RCOV=100.415;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=142222146:142222146;RD_CLUSTER=142222153:142222153;NINDEL=9;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:13:49:20:25:31;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000165238.17:WNK2	GT	0/1
chr9	102311371	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=3112;END=102311387;TSD=+AGATTTTATTCATCAT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=chr11:94040037~sibling;STRAND=+;AF=0.19811320754716982;LCLIP=14;RCLIP=5;LDISC=16;RDISC=17;LPOLYA=14;RPOLYA=0;LRAWCLIP=54;RRAWCLIP=43;AF_CLIP=21;AF_FMAP=85;AF_DISC=214;AF_CONCORDNT=628;LDRC=0;LDNRC=16;RDRC=17;RDNRC=0;LCOV=65.53;RCOV=83.425;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=17;RD_AKR_NRC=0;LC_CLUSTER=6017:6042;RC_CLUSTER=3281:3294;LD_CLUSTER=2938.0:3259.5;RD_CLUSTER=5648.0:6059.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:86:11:86:86:86:86:86:22;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr9	115321587	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=951;END=115321601;TSD=+AAGTGTGGCATATT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.29914529914529914;LCLIP=24;RCLIP=19;LDISC=34;RDISC=39;LPOLYA=0;RPOLYA=19;LRAWCLIP=61;RRAWCLIP=61;AF_CLIP=35;AF_FMAP=82;AF_DISC=245;AF_CONCORDNT=628;LDRC=0;LDNRC=34;RDRC=21;RDNRC=18;LCOV=74.275;RCOV=74.385;LD_AKR_RC=0;LD_AKR_NRC=34;RD_AKR_RC=39;RD_AKR_NRC=0;LC_CLUSTER=5105:5159;RC_CLUSTER=6016:6056;LD_CLUSTER=5638.0:6057.5;RD_CLUSTER=5028.0:5481.5;NINDEL=18;CLIP_LEN=5:5:5:23:4:16:42:31:70:58:3:41:66:5:54:35:69:57:57:49:69:69:5;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_22.0;GENE_INFO=intron:ENSG00000173077.16:DELEC1	GT	0/1
chr10	25418757	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6002;END=25418771;TSD=+GAAAATAATCTTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.19626168224299065;LCLIP=19;RCLIP=11;LDISC=26;RDISC=25;LPOLYA=0;RPOLYA=11;LRAWCLIP=60;RRAWCLIP=50;AF_CLIP=21;AF_FMAP=86;AF_DISC=224;AF_CONCORDNT=643;LDRC=2;LDNRC=24;RDRC=1;RDNRC=24;LCOV=77.825;RCOV=64.41499999999999;LD_AKR_RC=2;LD_AKR_NRC=24;RD_AKR_RC=21;RD_AKR_NRC=4;LC_CLUSTER=19:72;RC_CLUSTER=5990:6021;LD_CLUSTER=5544.0:6020.0;RD_CLUSTER=72.0:810.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:17:17:15:18:18:26:29:26:19:75;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_18.3;GENE_INFO=intron:ENSG00000151025.11:GPR158	GT	0/1
chr10	38294739	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=0;END=38294739;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_and_half_transduction;TD_SRC=chr20:23426109-23432140~0~orphan;STRAND=+;AF=0.32075471698113206;LCLIP=14;RCLIP=0;LDISC=1;RDISC=32;LPOLYA=7;RPOLYA=0;LRAWCLIP=38;RRAWCLIP=37;AF_CLIP=17;AF_FMAP=36;AF_DISC=81;AF_CONCORDNT=163;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=74.42777777777778;RCOV=78.05333333333334;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=-1:-1;NINDEL=3;CLIP_LEN=34:5:6:19:25:25:41:41:24:29:32:28:48:69:27:2:3:25:31:31:35:38:61:75;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000226113.1:ENSG00000226113/intron:ENSG00000283930.1:PLD5P1	GT	0/1
chr10	38615513	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=16397383;END=38615513;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr22:-1-16403433;STRAND=+;AF=0.10869565217391304;LCLIP=8;RCLIP=0;LDISC=11;RDISC=12;LPOLYA=3;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=56;AF_CLIP=5;AF_FMAP=41;AF_DISC=95;AF_CONCORDNT=111;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=25.67;RCOV=76.255;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=16403433:16403433;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:79:35;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_11.7;GENE_INFO=not_gene_region	GT	0/1
chr10	42148247	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=0;END=42148247;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_and_half_transduction;TD_SRC=chr17:27464630~sibling;STRAND=+;AF=0.4230769230769231;LCLIP=8;RCLIP=0;LDISC=15;RDISC=24;LPOLYA=3;RPOLYA=0;LRAWCLIP=43;RRAWCLIP=50;AF_CLIP=22;AF_FMAP=30;AF_DISC=73;AF_CONCORDNT=196;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=130.51111111111112;RCOV=144.86666666666667;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=-1:-1;NINDEL=3;CLIP_LEN=34:5:6:19:25:25:41:41:24:29:32:28:48:69:27:2:2:2:4:4:2:7:7:8:16:11:7:10:57:67;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=up_stream:ENSG00000229485.1:KSR1P1	GT	0/1
chr10	74470577	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=178357170;END=74470577;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr1:-1-178363220;STRAND=+;AF=0.6794871794871795;LCLIP=100;RCLIP=0;LDISC=6;RDISC=21;LPOLYA=28;RPOLYA=0;LRAWCLIP=73;RRAWCLIP=69;AF_CLIP=53;AF_FMAP=25;AF_DISC=108;AF_CONCORDNT=84;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=97.395;RCOV=245.375;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=178363220:178363220;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:21:74:7:26:71:42:87:25:65:66:66;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_18.3;GENE_INFO=intron:ENSG00000156110.15:ADK	GT	0/1
chr10	119009618	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=46240019;END=119009618;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr1:46246069-46246073;STRAND=+;AF=0.4318181818181818;LCLIP=17;RCLIP=0;LDISC=11;RDISC=14;LPOLYA=11;RPOLYA=0;LRAWCLIP=66;RRAWCLIP=70;AF_CLIP=19;AF_FMAP=25;AF_DISC=144;AF_CONCORDNT=97;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=21.895;RCOV=59.645;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=46246069:46246069;RD_CLUSTER=46246073:46246073;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:17:26:26:39:41:44:45:53:60:62:63:63:68:77;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000229272.2:LINC03036	GT	0/1
chr10	122695700	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5974;END=122695715;TSD=+AAGAAAAACTTAAAG;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chr8:18002014~sibling;STRAND=+;AF=0.15841584158415842;LCLIP=12;RCLIP=15;LDISC=47;RDISC=21;LPOLYA=12;RPOLYA=0;LRAWCLIP=51;RRAWCLIP=49;AF_CLIP=16;AF_FMAP=85;AF_DISC=246;AF_CONCORDNT=647;LDRC=47;LDNRC=0;RDRC=21;RDNRC=0;LCOV=95.515;RCOV=61.730000000000004;LD_AKR_RC=1;LD_AKR_NRC=46;RD_AKR_RC=21;RD_AKR_NRC=0;LC_CLUSTER=6032:6053;RC_CLUSTER=18:33;LD_CLUSTER=76.5:474.0;RD_CLUSTER=5666.5:6076.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:7:16:25:25:25:25:29:59:70:71;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr11	31581473	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=647;END=31581486;TSD=+AAAAATAACTTTG;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.2764227642276423;LCLIP=12;RCLIP=31;LDISC=56;RDISC=15;LPOLYA=12;RPOLYA=2;LRAWCLIP=48;RRAWCLIP=59;AF_CLIP=34;AF_FMAP=89;AF_DISC=240;AF_CONCORDNT=661;LDRC=52;LDNRC=4;RDRC=14;RDNRC=1;LCOV=116.845;RCOV=78.80499999999999;LD_AKR_RC=3;LD_AKR_NRC=53;RD_AKR_RC=14;RD_AKR_NRC=1;LC_CLUSTER=6045:6068;RC_CLUSTER=5421:5445;LD_CLUSTER=5440.0:5769.0;RD_CLUSTER=5723.5:6066.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:7:16:45:45:45:47:55:66:66:66:66:66:66:66:66:67:67;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_27.9;GENE_INFO=intron:ENSG00000109911.19:ELP4	GT	0/1
chr11	33213559	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=83377504;END=33213559;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr5:-1-83383554;STRAND=+;AF=0.38095238095238093;LCLIP=14;RCLIP=0;LDISC=5;RDISC=14;LPOLYA=7;RPOLYA=0;LRAWCLIP=72;RRAWCLIP=63;AF_CLIP=16;AF_FMAP=26;AF_DISC=125;AF_CONCORDNT=89;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=19.63;RCOV=53.605;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=83383554:83383554;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:8:55:33:59:15:59:5:53:45;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_24.2;GENE_INFO=not_gene_region	GT	0/1
chr11	33648576	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1299;END=33648592;TSD=+TAAATACACTAGGCCA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.16822429906542055;LCLIP=9;RCLIP=14;LDISC=24;RDISC=11;LPOLYA=9;RPOLYA=0;LRAWCLIP=51;RRAWCLIP=47;AF_CLIP=18;AF_FMAP=89;AF_DISC=211;AF_CONCORDNT=641;LDRC=1;LDNRC=23;RDRC=11;RDNRC=0;LCOV=74.085;RCOV=60.875;LD_AKR_RC=2;LD_AKR_NRC=22;RD_AKR_RC=11;RD_AKR_NRC=0;LC_CLUSTER=6046:6069;RC_CLUSTER=4770:4803;LD_CLUSTER=4074.5:4811.5;RD_CLUSTER=5744.5:6058.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:16:36:51:56:64:68:68;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000110427.17:KIAA1549L	GT	0/1
chr11	38791107	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=51811576;END=38791107;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr8:51817626-51818798;STRAND=+;AF=0.609375;LCLIP=83;RCLIP=0;LDISC=32;RDISC=48;LPOLYA=38;RPOLYA=0;LRAWCLIP=78;RRAWCLIP=68;AF_CLIP=39;AF_FMAP=25;AF_DISC=128;AF_CONCORDNT=85;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=60.4;RCOV=237.07;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=51817626:51817626;RD_CLUSTER=51818798:51818798;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:5:27:26:13:30:51:50:23:34:8:29:34:72:46:59;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr11	41072281	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=45609870;END=41072281;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr20:45615920-45615947;STRAND=+;AF=0.6323529411764706;LCLIP=53;RCLIP=0;LDISC=15;RDISC=18;LPOLYA=32;RPOLYA=0;LRAWCLIP=67;RRAWCLIP=62;AF_CLIP=43;AF_FMAP=25;AF_DISC=101;AF_CONCORDNT=82;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=54.36;RCOV=73.99;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=45615920:45615920;RD_CLUSTER=45615947:45615947;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:9:10:16:36:43:53:59:83:83;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000148948.8:LRRC4C	GT	0/1
chr11	41810246	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=540;END=41810260;TSD=+AACAACAGAGGTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.13725490196078433;LCLIP=13;RCLIP=10;LDISC=31;RDISC=22;LPOLYA=0;RPOLYA=10;LRAWCLIP=50;RRAWCLIP=45;AF_CLIP=14;AF_FMAP=88;AF_DISC=228;AF_CONCORDNT=642;LDRC=1;LDNRC=30;RDRC=22;RDNRC=0;LCOV=83.485;RCOV=59.825;LD_AKR_RC=0;LD_AKR_NRC=31;RD_AKR_RC=22;RD_AKR_NRC=0;LC_CLUSTER=5479:5524;RC_CLUSTER=6016:6019;LD_CLUSTER=5619.5:6006.5;RD_CLUSTER=5069.5:5510.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:14:44:64:46:46:46;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000255171.7:LINC01499	GT	0/1
chr11	48734294	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=292;END=48734299;TSD=+AAAAA;TSDLEN=5;SUBTYPE=two_side_tprt_both;TD_SRC=chr1:85932910~sibling;STRAND=+;AF=0.3643410852713178;LCLIP=18;RCLIP=34;LDISC=26;RDISC=55;LPOLYA=18;RPOLYA=0;LRAWCLIP=59;RRAWCLIP=53;AF_CLIP=47;AF_FMAP=82;AF_DISC=260;AF_CONCORDNT=619;LDRC=24;LDNRC=2;RDRC=51;RDNRC=4;LCOV=96.225;RCOV=84.215;LD_AKR_RC=2;LD_AKR_NRC=24;RD_AKR_RC=51;RD_AKR_NRC=4;LC_CLUSTER=6015:6044;RC_CLUSTER=5711:5766;LD_CLUSTER=5758.0:5988.0;RD_CLUSTER=5805.0:6030.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:13:22:23:31:45:50:53:55:56:56:61:78:38;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_7.0;GENE_INFO=not_gene_region	GT	0/1
chr11	58404364	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1467;END=58404376;TSD=+AAAAATGCTAGA;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.3543307086614173;LCLIP=20;RCLIP=34;LDISC=64;RDISC=41;LPOLYA=20;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=55;AF_CLIP=45;AF_FMAP=82;AF_DISC=264;AF_CONCORDNT=630;LDRC=64;LDNRC=0;RDRC=38;RDNRC=3;LCOV=81.195;RCOV=75.38999999999999;LD_AKR_RC=0;LD_AKR_NRC=64;RD_AKR_RC=39;RD_AKR_NRC=2;LC_CLUSTER=5972:6027;RC_CLUSTER=4560:4626;LD_CLUSTER=4609.0:4957.5;RD_CLUSTER=5678.5:6019.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:9:9:9:9:12:17:23:32:38:38:38:38:45:53:54;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000172769.4:OR5B3	GT	0/1
chr11	67831577	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6016;END=67831588;TSD=+AAAGAACTGAG;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.14;LCLIP=4;RCLIP=5;LDISC=11;RDISC=12;LPOLYA=4;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=49;AF_CLIP=14;AF_FMAP=86;AF_DISC=213;AF_CONCORDNT=649;LDRC=11;LDNRC=0;RDRC=11;RDNRC=1;LCOV=90.42;RCOV=77.235;LD_AKR_RC=0;LD_AKR_NRC=11;RD_AKR_RC=11;RD_AKR_NRC=1;LC_CLUSTER=6011:6031;RC_CLUSTER=15:25;LD_CLUSTER=64.0:416.5;RD_CLUSTER=5372.0:6004.5;NINDEL=9;CLIP_LEN=5:5:5:23:4:16:42:31:4:14:34:34:35:48:59:68;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000273819.1:ENPP7P7	GT	0/1
chr11	87855850	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5984;END=87855864;TSD=+CCTTGGTATTTTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=chr12:66057592~sibling;STRAND=-;AF=0.2457627118644068;LCLIP=23;RCLIP=3;LDISC=14;RDISC=32;LPOLYA=0;RPOLYA=3;LRAWCLIP=64;RRAWCLIP=47;AF_CLIP=29;AF_FMAP=89;AF_DISC=240;AF_CONCORDNT=638;LDRC=0;LDNRC=14;RDRC=3;RDNRC=29;LCOV=60.515;RCOV=79.565;LD_AKR_RC=0;LD_AKR_NRC=14;RD_AKR_RC=29;RD_AKR_NRC=3;LC_CLUSTER=15:78;RC_CLUSTER=6019:6019;LD_CLUSTER=5941.5:6094.5;RD_CLUSTER=66.0:684.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:38:64:37:57:8:21:2:31:66:4:67:67:78:2:38:2:66:79:67:67;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000285835.1:ENSG00000285835	GT	0/1
chr11	94951202	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=4097;END=94951204;TSD=+AA;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.3492063492063492;LCLIP=13;RCLIP=33;LDISC=46;RDISC=18;LPOLYA=13;RPOLYA=5;LRAWCLIP=55;RRAWCLIP=58;AF_CLIP=44;AF_FMAP=82;AF_DISC=242;AF_CONCORDNT=629;LDRC=45;LDNRC=1;RDRC=18;RDNRC=0;LCOV=94.57000000000001;RCOV=73.78;LD_AKR_RC=1;LD_AKR_NRC=45;RD_AKR_RC=18;RD_AKR_NRC=0;LC_CLUSTER=6006:6037;RC_CLUSTER=1940:1995;LD_CLUSTER=2003.5:2799.0;RD_CLUSTER=5812.5:6094.5;NINDEL=7;CLIP_LEN=5:5:5:23:4:16:42:31:17:18:23:23:23:23:23:23:25:31:48:60:60:60:60;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr11	104685400	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1421;END=104685402;TSD=+TC;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.24369747899159663;LCLIP=17;RCLIP=3;LDISC=22;RDISC=37;LPOLYA=0;RPOLYA=3;LRAWCLIP=55;RRAWCLIP=46;AF_CLIP=29;AF_FMAP=90;AF_DISC=222;AF_CONCORDNT=638;LDRC=2;LDNRC=20;RDRC=0;RDNRC=37;LCOV=80.99;RCOV=91.945;LD_AKR_RC=1;LD_AKR_NRC=21;RD_AKR_RC=37;RD_AKR_NRC=0;LC_CLUSTER=4620:4686;RC_CLUSTER=6037:6041;LD_CLUSTER=5592.0:6094.5;RD_CLUSTER=4670.0:5231.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:16:29:12:10:62:50:62:4:10;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_27.6;GENE_INFO=not_gene_region	GT	0/1
chr11	123371084	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=241;END=123371086;TSD=+AA;TSDLEN=2;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.23529411764705882;LCLIP=13;RCLIP=20;LDISC=6;RDISC=20;LPOLYA=13;RPOLYA=0;LRAWCLIP=55;RRAWCLIP=57;AF_CLIP=28;AF_FMAP=91;AF_DISC=240;AF_CONCORDNT=650;LDRC=6;LDNRC=0;RDRC=20;RDNRC=0;LCOV=79.385;RCOV=77.145;LD_AKR_RC=0;LD_AKR_NRC=6;RD_AKR_RC=20;RD_AKR_NRC=0;LC_CLUSTER=6045:6066;RC_CLUSTER=5825:5887;LD_CLUSTER=5950.0:6016.0;RD_CLUSTER=5885.5:6030.5;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:3:3:3:3:14:14:14:29:31:36:47:52:61:63:71:74;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000023171.20:GRAMD1B	GT	0/1
chr11	134435748	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=269;END=134435753;TSD=-GACAG;TSDLEN=5;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3412698412698413;LCLIP=31;RCLIP=29;LDISC=46;RDISC=34;LPOLYA=0;RPOLYA=29;LRAWCLIP=63;RRAWCLIP=64;AF_CLIP=43;AF_FMAP=83;AF_DISC=255;AF_CONCORDNT=624;LDRC=0;LDNRC=46;RDRC=0;RDNRC=34;LCOV=77.25;RCOV=98.47;LD_AKR_RC=0;LD_AKR_NRC=46;RD_AKR_RC=34;RD_AKR_NRC=0;LC_CLUSTER=5742:5798;RC_CLUSTER=5964:6011;LD_CLUSTER=5787.0:6020.5;RD_CLUSTER=5785.0:6007.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:74:18:66:18:50:39:21:7:31:36:29:36:65:5:59:8:8;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000255545.8:B3GAT1-DT	GT	0/1
chr12	11066591	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=247;END=11066600;TSD=+TATGTATTT;TSDLEN=9;SUBTYPE=two_side_tprt;TD_SRC=not_transduction;STRAND=.;AF=0.20869565217391303;LCLIP=15;RCLIP=1;LDISC=14;RDISC=19;LPOLYA=0;RPOLYA=0;LRAWCLIP=57;RRAWCLIP=57;AF_CLIP=24;AF_FMAP=91;AF_DISC=225;AF_CONCORDNT=649;LDRC=0;LDNRC=14;RDRC=1;RDNRC=18;LCOV=97.235;RCOV=104.71;LD_AKR_RC=0;LD_AKR_NRC=14;RD_AKR_RC=19;RD_AKR_NRC=0;LC_CLUSTER=5914:5928;RC_CLUSTER=6161:6161;LD_CLUSTER=5958.0:6035.5;RD_CLUSTER=5958.0:6019.5;NINDEL=15;CLIP_LEN=5:5:5:23:4:16:42:31:24:30:40:30:59:10:11:11:41:11;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000275778.3:ENSG00000275778/intron:ENSG00000231887.9:PRH1/intron:ENSG00000212127.6:TAS2R14	GT	0/1
chr12	12780745	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1713;END=12780760;TSD=+ACACAGCTAATTTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.12149532710280374;LCLIP=11;RCLIP=8;LDISC=22;RDISC=22;LPOLYA=8;RPOLYA=8;LRAWCLIP=47;RRAWCLIP=43;AF_CLIP=13;AF_FMAP=94;AF_DISC=229;AF_CONCORDNT=649;LDRC=0;LDNRC=22;RDRC=1;RDNRC=21;LCOV=72.765;RCOV=77.83500000000001;LD_AKR_RC=0;LD_AKR_NRC=22;RD_AKR_RC=21;RD_AKR_NRC=1;LC_CLUSTER=4285:4331;RC_CLUSTER=5961:5998;LD_CLUSTER=5561.5:6008.5;RD_CLUSTER=4341.0:4587.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:45:17:17;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000178878.13:APOLD1	GT	0/1
chr12	24715766	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6002;END=24715783;TSD=+GAGGGTGAATGTTTTTC;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.19811320754716982;LCLIP=10;RCLIP=14;LDISC=22;RDISC=19;LPOLYA=0;RPOLYA=14;LRAWCLIP=48;RRAWCLIP=48;AF_CLIP=21;AF_FMAP=85;AF_DISC=224;AF_CONCORDNT=642;LDRC=0;LDNRC=22;RDRC=0;RDNRC=19;LCOV=85.115;RCOV=84.125;LD_AKR_RC=1;LD_AKR_NRC=21;RD_AKR_RC=19;RD_AKR_NRC=0;LC_CLUSTER=17:53;RC_CLUSTER=5981:6019;LD_CLUSTER=5518.5:6032.5;RD_CLUSTER=78.5:390.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:26:29:29:29:29:29:29:41:43;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000255745.2:ENSG00000255745	GT	0/1
chr12	28073479	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5983;END=28073494;TSD=+ATGTACTGTATTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:193218303~sibling;STRAND=-;AF=0.3050847457627119;LCLIP=30;RCLIP=16;LDISC=15;RDISC=55;LPOLYA=0;RPOLYA=16;LRAWCLIP=67;RRAWCLIP=52;AF_CLIP=36;AF_FMAP=82;AF_DISC=237;AF_CONCORDNT=630;LDRC=0;LDNRC=15;RDRC=2;RDNRC=53;LCOV=62.265;RCOV=77.78999999999999;LD_AKR_RC=0;LD_AKR_NRC=15;RD_AKR_RC=54;RD_AKR_NRC=1;LC_CLUSTER=16:70;RC_CLUSTER=5982:6023;LD_CLUSTER=5607.5:6019.0;RD_CLUSTER=67.0:360.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:47:69:67:60:21:51:70:13:13:72:13:74:70:74:13:13:79:70;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_15.3;GENE_INFO=not_gene_region	GT	0/1
chr12	33864389	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5974;END=33864403;TSD=+CTTTTTGCTTCTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=chr13:48282533~sibling;STRAND=-;AF=0.3492063492063492;LCLIP=36;RCLIP=3;LDISC=3;RDISC=46;LPOLYA=0;RPOLYA=3;LRAWCLIP=65;RRAWCLIP=41;AF_CLIP=44;AF_FMAP=82;AF_DISC=239;AF_CONCORDNT=630;LDRC=0;LDNRC=3;RDRC=1;RDNRC=45;LCOV=60.410000000000004;RCOV=88.36;LD_AKR_RC=0;LD_AKR_NRC=3;RD_AKR_RC=46;RD_AKR_NRC=0;LC_CLUSTER=17:66;RC_CLUSTER=6053:6054;LD_CLUSTER=5933.5:6017.0;RD_CLUSTER=76.5:469.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:65:48:8:16:63:6:15:73:48:55:58:58:28:58:65:61:20:28:31:55:28;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_24.0;GENE_INFO=not_gene_region	GT	0/1
chr12	42863169	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1132;END=42863182;TSD=+TTTAATTCTTTTT;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3412698412698413;LCLIP=35;RCLIP=20;LDISC=50;RDISC=68;LPOLYA=0;RPOLYA=20;LRAWCLIP=51;RRAWCLIP=61;AF_CLIP=43;AF_FMAP=83;AF_DISC=254;AF_CONCORDNT=628;LDRC=0;LDNRC=50;RDRC=1;RDNRC=67;LCOV=69.63499999999999;RCOV=80.69;LD_AKR_RC=0;LD_AKR_NRC=50;RD_AKR_RC=67;RD_AKR_NRC=1;LC_CLUSTER=4902:4965;RC_CLUSTER=5984:6034;LD_CLUSTER=5559.0:6000.5;RD_CLUSTER=4945.0:5476.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:32:41:15:73:15:15:15;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_30.2;GENE_INFO=not_gene_region	GT	0/1
chr12	46975842	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=970;END=46975847;TSD=+AAGAG;TSDLEN=5;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2037037037037037;LCLIP=7;RCLIP=15;LDISC=16;RDISC=9;LPOLYA=7;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=62;AF_CLIP=22;AF_FMAP=86;AF_DISC=230;AF_CONCORDNT=639;LDRC=16;LDNRC=0;RDRC=9;RDNRC=0;LCOV=62.585;RCOV=45.94499999999999;LD_AKR_RC=0;LD_AKR_NRC=16;RD_AKR_RC=9;RD_AKR_NRC=0;LC_CLUSTER=6012:6046;RC_CLUSTER=5076:5090;LD_CLUSTER=5084.0:5426.5;RD_CLUSTER=5776.5:6031.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:8:8:8:8:8:16:17:30:30:30:33:38:55:64:64:68:68:69:69;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_8.0;GENE_INFO=not_gene_region	GT	0/1
chr12	48448022	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=686;END=48448043;TSD=+AAAAAAAACAGAGACCTCAGT;TSDLEN=21;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.3543307086614173;LCLIP=15;RCLIP=34;LDISC=83;RDISC=31;LPOLYA=15;RPOLYA=1;LRAWCLIP=56;RRAWCLIP=67;AF_CLIP=45;AF_FMAP=82;AF_DISC=260;AF_CONCORDNT=630;LDRC=2;LDNRC=81;RDRC=30;RDNRC=1;LCOV=91.91499999999999;RCOV=57.03;LD_AKR_RC=2;LD_AKR_NRC=81;RD_AKR_RC=30;RD_AKR_NRC=1;LC_CLUSTER=6024:6045;RC_CLUSTER=5359:5411;LD_CLUSTER=4892.0:5405.5;RD_CLUSTER=5607.0:6045.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:6:6:26:26:26:27:41:42:42:42:42:48:48:48:49:49:49:49:50:50:34:57:57:58:63;INS_INV=5-prime-inversion;REF_REP=Left_is_LINE1_copy_26.3;GENE_INFO=not_gene_region	GT	0/1
chr12	72845798	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=94337065;END=72845798;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr15:94343115-94345078;STRAND=+;AF=0.46153846153846156;LCLIP=22;RCLIP=0;LDISC=23;RDISC=7;LPOLYA=12;RPOLYA=0;LRAWCLIP=59;RRAWCLIP=65;AF_CLIP=24;AF_FMAP=28;AF_DISC=101;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=46.055;RCOV=61.155;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=94343115:94343115;RD_CLUSTER=94345078:94345078;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:2:5:17:19:28:32:36:44:51:56:65;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_16.5;GENE_INFO=not_gene_region	GT	0/1
chr12	84571353	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=869;END=84571369;TSD=+AAAAATCAGGTATCGG;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2222222222222222;LCLIP=6;RCLIP=20;LDISC=30;RDISC=10;LPOLYA=6;RPOLYA=0;LRAWCLIP=52;RRAWCLIP=45;AF_CLIP=24;AF_FMAP=84;AF_DISC=218;AF_CONCORDNT=651;LDRC=30;LDNRC=0;RDRC=10;RDNRC=0;LCOV=86.045;RCOV=68.71000000000001;LD_AKR_RC=1;LD_AKR_NRC=29;RD_AKR_RC=10;RD_AKR_NRC=0;LC_CLUSTER=6017:6018;RC_CLUSTER=5149:5197;LD_CLUSTER=5195.0:5463.5;RD_CLUSTER=5741.5:6002.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:18:25:30:30:33:62;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr12	117376641	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6031;END=117376655;TSD=+CCCTCTCATTCTTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.2619047619047619;LCLIP=25;RCLIP=11;LDISC=13;RDISC=46;LPOLYA=0;RPOLYA=11;LRAWCLIP=61;RRAWCLIP=43;AF_CLIP=33;AF_FMAP=93;AF_DISC=224;AF_CONCORDNT=652;LDRC=1;LDNRC=12;RDRC=5;RDNRC=41;LCOV=94.255;RCOV=127.4;LD_AKR_RC=1;LD_AKR_NRC=12;RD_AKR_RC=43;RD_AKR_NRC=3;LC_CLUSTER=15:69;RC_CLUSTER=6019:6046;LD_CLUSTER=5597.5:6060.0;RD_CLUSTER=64.0:410.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:69:6:70:53:40:32:26:39:58:26:59:26:58:40:59:7:26;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000089250.20:NOS1	GT	0/1
chr12	126318382	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5958;END=126318397;TSD=+GACTTGTACTCTTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.19658119658119658;LCLIP=17;RCLIP=10;LDISC=31;RDISC=37;LPOLYA=0;RPOLYA=10;LRAWCLIP=53;RRAWCLIP=45;AF_CLIP=23;AF_FMAP=94;AF_DISC=248;AF_CONCORDNT=652;LDRC=1;LDNRC=30;RDRC=0;RDNRC=37;LCOV=86.16999999999999;RCOV=87.53999999999999;LD_AKR_RC=0;LD_AKR_NRC=31;RD_AKR_RC=37;RD_AKR_NRC=0;LC_CLUSTER=24:69;RC_CLUSTER=5964:5982;LD_CLUSTER=5738.0:6053.5;RD_CLUSTER=75.5:503.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:61:34:61:70:41:66:8:59:25:25;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000255595.5:ENSG00000255595	GT	0/1
chr13	18196940	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=189042501;END=18196940;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr3:-1-189048551;STRAND=+;AF=0.22448979591836735;LCLIP=21;RCLIP=0;LDISC=7;RDISC=5;LPOLYA=4;RPOLYA=0;LRAWCLIP=66;RRAWCLIP=61;AF_CLIP=11;AF_FMAP=38;AF_DISC=117;AF_CONCORDNT=104;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=54.36;RCOV=130.615;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=189048551:189048551;NINDEL=1;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:16:5;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_23.9;GENE_INFO=intron:ENSG00000279516.2:FAM230C	GT	0/1
chr13	21915651	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=144;END=21915666;TSD=+AAAAATTCTGATGAC;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.21052631578947367;LCLIP=20;RCLIP=13;LDISC=11;RDISC=22;LPOLYA=20;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=46;AF_CLIP=24;AF_FMAP=90;AF_DISC=237;AF_CONCORDNT=642;LDRC=11;LDNRC=0;RDRC=20;RDNRC=2;LCOV=99.01;RCOV=111.785;LD_AKR_RC=0;LD_AKR_NRC=11;RD_AKR_RC=22;RD_AKR_NRC=0;LC_CLUSTER=5970:5998;RC_CLUSTER=5854:5890;LD_CLUSTER=5942.0:5980.5;RD_CLUSTER=5727.5:6006.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:24:25:23:12:14:14;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr13	42197252	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=355;END=42197267;TSD=+AAAAAAAAAAAAAAA;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.18;LCLIP=7;RCLIP=14;LDISC=20;RDISC=13;LPOLYA=7;RPOLYA=0;LRAWCLIP=53;RRAWCLIP=46;AF_CLIP=18;AF_FMAP=82;AF_DISC=208;AF_CONCORDNT=639;LDRC=20;LDNRC=0;RDRC=12;RDNRC=1;LCOV=68.385;RCOV=52.735;LD_AKR_RC=0;LD_AKR_NRC=20;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6023:6041;RC_CLUSTER=5686:5740;LD_CLUSTER=5735.0:5972.5;RD_CLUSTER=5681.5:6049.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:19:21:18:21:23:17:127:120:82;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000102780.17:DGKH	GT	0/1
chr13	60888201	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5986;END=60888210;TSD=+CTCTTTTTT;TSDLEN=9;SUBTYPE=two_side_tprt_both;TD_SRC=chr7:25047718~sibling;STRAND=-;AF=0.28205128205128205;LCLIP=26;RCLIP=20;LDISC=60;RDISC=46;LPOLYA=0;RPOLYA=20;LRAWCLIP=56;RRAWCLIP=59;AF_CLIP=33;AF_FMAP=84;AF_DISC=273;AF_CONCORDNT=623;LDRC=0;LDNRC=60;RDRC=2;RDNRC=44;LCOV=75.19;RCOV=80.72999999999999;LD_AKR_RC=1;LD_AKR_NRC=59;RD_AKR_RC=45;RD_AKR_NRC=1;LC_CLUSTER=17:72;RC_CLUSTER=5999:6022;LD_CLUSTER=5570.0:6075.5;RD_CLUSTER=64.0:526.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:26:44:53:61:32:12:45:29:56:29:58:76:8;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000225249.6:LINC00378	GT	0/1
chr13	61160350	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=535;END=61160363;TSD=+AAGAGTTTGGGGA;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.21367521367521367;LCLIP=19;RCLIP=15;LDISC=26;RDISC=29;LPOLYA=19;RPOLYA=0;LRAWCLIP=58;RRAWCLIP=52;AF_CLIP=25;AF_FMAP=92;AF_DISC=211;AF_CONCORDNT=644;LDRC=0;LDNRC=26;RDRC=29;RDNRC=0;LCOV=64.36;RCOV=71.86;LD_AKR_RC=0;LD_AKR_NRC=26;RD_AKR_RC=28;RD_AKR_NRC=1;LC_CLUSTER=5975:6040;RC_CLUSTER=5505:5546;LD_CLUSTER=5003.0:5511.0;RD_CLUSTER=5668.5:6039.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:10:26:29:20:51:102:102:41:40:40:41:40:40;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000225249.6:LINC00378	GT	0/1
chr13	63035851	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=22144776;END=63035851;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr17:22150826-22150883;STRAND=+;AF=0.21951219512195122;LCLIP=19;RCLIP=0;LDISC=46;RDISC=57;LPOLYA=3;RPOLYA=0;LRAWCLIP=63;RRAWCLIP=59;AF_CLIP=9;AF_FMAP=32;AF_DISC=112;AF_CONCORDNT=158;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=165.345;RCOV=80.03;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=22150826:22150826;RD_CLUSTER=22150883:22150883;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:8:12;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000273550.2:ENSG00000273550	GT	0/1
chr13	64975092	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=289;END=64975103;TSD=+ATTCCACTTTC;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=chr12:66057591~sibling;STRAND=-;AF=0.2627118644067797;LCLIP=22;RCLIP=5;LDISC=18;RDISC=24;LPOLYA=0;RPOLYA=5;LRAWCLIP=58;RRAWCLIP=40;AF_CLIP=31;AF_FMAP=87;AF_DISC=229;AF_CONCORDNT=641;LDRC=0;LDNRC=18;RDRC=0;RDNRC=24;LCOV=66.395;RCOV=94.26500000000001;LD_AKR_RC=1;LD_AKR_NRC=17;RD_AKR_RC=24;RD_AKR_NRC=0;LC_CLUSTER=5714:5774;RC_CLUSTER=6019:6029;LD_CLUSTER=5767.0:6094.5;RD_CLUSTER=5761.0:5959.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:14:35:3:7:30:15:10:15:30:15:18:18:15:15:15;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_15.4;GENE_INFO=not_gene_region	GT	0/1
chr13	78685652	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1833;END=78685658;TSD=+TAAACA;TSDLEN=6;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.36428571428571427;LCLIP=38;RCLIP=24;LDISC=60;RDISC=83;LPOLYA=36;RPOLYA=24;LRAWCLIP=65;RRAWCLIP=54;AF_CLIP=51;AF_FMAP=89;AF_DISC=256;AF_CONCORDNT=639;LDRC=1;LDNRC=59;RDRC=8;RDNRC=75;LCOV=64.63499999999999;RCOV=115.75999999999999;LD_AKR_RC=8;LD_AKR_NRC=52;RD_AKR_RC=75;RD_AKR_NRC=8;LC_CLUSTER=4198:4257;RC_CLUSTER=6014:6031;LD_CLUSTER=5364.5:6034.0;RD_CLUSTER=4248.0:4686.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:39:16:24:7:9:13:40:4:59:25:4:39:20:54:24:23:32:24:35:35:35;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr13	85297466	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=730;END=85297477;TSD=+ATATTTTCTTT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.31092436974789917;LCLIP=29;RCLIP=17;LDISC=36;RDISC=44;LPOLYA=0;RPOLYA=17;LRAWCLIP=60;RRAWCLIP=46;AF_CLIP=37;AF_FMAP=82;AF_DISC=256;AF_CONCORDNT=623;LDRC=1;LDNRC=35;RDRC=1;RDNRC=43;LCOV=46.31999999999999;RCOV=78.995;LD_AKR_RC=1;LD_AKR_NRC=35;RD_AKR_RC=43;RD_AKR_NRC=1;LC_CLUSTER=5304:5365;RC_CLUSTER=5981:6034;LD_CLUSTER=5605.5:6094.5;RD_CLUSTER=5353.0:5727.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:13:35:72:72:55:49:45:74:5:5:45:38:2:38:45:5:67;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr13	85766014	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=626;END=85766017;TSD=-AAG;TSDLEN=3;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.10377358490566038;LCLIP=9;RCLIP=7;LDISC=24;RDISC=26;LPOLYA=0;RPOLYA=7;LRAWCLIP=47;RRAWCLIP=46;AF_CLIP=11;AF_FMAP=95;AF_DISC=226;AF_CONCORDNT=644;LDRC=0;LDNRC=24;RDRC=0;RDNRC=26;LCOV=76.875;RCOV=59.81;LD_AKR_RC=0;LD_AKR_NRC=24;RD_AKR_RC=26;RD_AKR_NRC=0;LC_CLUSTER=5395:5431;RC_CLUSTER=6017:6021;LD_CLUSTER=5744.5:6009.5;RD_CLUSTER=5439.0:5812.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:42:24:56;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000285834.1:ENSG00000285834	GT	0/1
chr13	90973968	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1525;END=90973977;TSD=+AAGAAAATA;TSDLEN=9;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.25892857142857145;LCLIP=5;RCLIP=20;LDISC=30;RDISC=23;LPOLYA=5;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=54;AF_CLIP=29;AF_FMAP=83;AF_DISC=223;AF_CONCORDNT=630;LDRC=29;LDNRC=1;RDRC=23;RDNRC=0;LCOV=77.67999999999999;RCOV=68.09;LD_AKR_RC=2;LD_AKR_NRC=28;RD_AKR_RC=23;RD_AKR_NRC=0;LC_CLUSTER=6012:6023;RC_CLUSTER=4498:4550;LD_CLUSTER=4558.5:4846.0;RD_CLUSTER=5768.5:6034.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:8:24:43:44:49:49:49:49:49:49:52:65;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr13	103643872	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1019;END=103643888;TSD=+TCCTTGCCCACTTTTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3050847457627119;LCLIP=30;RCLIP=14;LDISC=36;RDISC=58;LPOLYA=0;RPOLYA=14;LRAWCLIP=59;RRAWCLIP=55;AF_CLIP=36;AF_FMAP=82;AF_DISC=226;AF_CONCORDNT=624;LDRC=2;LDNRC=34;RDRC=3;RDNRC=55;LCOV=73.81;RCOV=95.52;LD_AKR_RC=2;LD_AKR_NRC=34;RD_AKR_RC=55;RD_AKR_NRC=3;LC_CLUSTER=5078:5133;RC_CLUSTER=6068:6097;LD_CLUSTER=5436.0:6045.5;RD_CLUSTER=5122.0:5628.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:19:64:52:48:18:39:61:65:44:51:65:51;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_17.8;GENE_INFO=not_gene_region	GT	0/1
chr14	27832045	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=474;END=27832055;TSD=+AGAAGATATG;TSDLEN=10;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.359375;LCLIP=29;RCLIP=28;LDISC=39;RDISC=52;LPOLYA=29;RPOLYA=0;LRAWCLIP=62;RRAWCLIP=52;AF_CLIP=46;AF_FMAP=82;AF_DISC=256;AF_CONCORDNT=628;LDRC=37;LDNRC=2;RDRC=51;RDNRC=1;LCOV=101.295;RCOV=65.515;LD_AKR_RC=2;LD_AKR_NRC=37;RD_AKR_RC=51;RD_AKR_NRC=1;LC_CLUSTER=6067:6096;RC_CLUSTER=5622:5683;LD_CLUSTER=5674.0:5995.0;RD_CLUSTER=5685.5:6015.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:19:38:47:50:50:50:50:65:65:65:65;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_24.8;GENE_INFO=intron:ENSG00000258932.5:MIR3171HG	GT	0/1
chr14	36205538	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=206;END=36205554;TSD=+AAGAATTTCCTGTTTA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.15841584158415842;LCLIP=8;RCLIP=12;LDISC=16;RDISC=13;LPOLYA=8;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=51;AF_CLIP=16;AF_FMAP=85;AF_DISC=225;AF_CONCORDNT=647;LDRC=16;LDNRC=0;RDRC=13;RDNRC=0;LCOV=74.78;RCOV=75.005;LD_AKR_RC=1;LD_AKR_NRC=15;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6041:6061;RC_CLUSTER=5855:5890;LD_CLUSTER=5911.0:6035.0;RD_CLUSTER=5913.5:6049.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:16:34:46:46:49:51:51:51:51:51:76:43;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr14	62759565	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=46642690;END=62759565;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr14:46648740-46648854;STRAND=+;AF=0.33962264150943394;LCLIP=25;RCLIP=0;LDISC=8;RDISC=9;LPOLYA=4;RPOLYA=0;LRAWCLIP=68;RRAWCLIP=54;AF_CLIP=18;AF_FMAP=35;AF_DISC=104;AF_CONCORDNT=108;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=54.36;RCOV=98.15;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=46648740:46648740;RD_CLUSTER=46648854:46648854;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:46:57:9:2:44:9:68:68;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000140015.20:KCNH5	GT	0/1
chr14	85915451	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5697;END=85915466;TSD=+GTGGAGTATCTTTTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.3387096774193548;LCLIP=31;RCLIP=22;LDISC=65;RDISC=57;LPOLYA=0;RPOLYA=22;LRAWCLIP=70;RRAWCLIP=56;AF_CLIP=42;AF_FMAP=82;AF_DISC=286;AF_CONCORDNT=639;LDRC=2;LDNRC=63;RDRC=2;RDNRC=55;LCOV=96.745;RCOV=116.485;LD_AKR_RC=1;LD_AKR_NRC=64;RD_AKR_RC=57;RD_AKR_NRC=0;LC_CLUSTER=328:392;RC_CLUSTER=5959:6025;LD_CLUSTER=5574.5:6003.5;RD_CLUSTER=379.0:921.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:4:4:4:6:7:26:26:26:26:40:45:64:64:64:33:32;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_15.4;GENE_INFO=intron:ENSG00000258733.7:LINC02328	GT	0/1
chr15	23498385	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=396;END=23498414;TSD=-GTTTCTATATAAGGAGTTAGCTATGCTGC;TSDLEN=29;SUBTYPE=two_side_tprt_both;TD_SRC=chr15:30859020~sibling;STRAND=-;AF=0.25925925925925924;LCLIP=31;RCLIP=2;LDISC=13;RDISC=43;LPOLYA=0;RPOLYA=2;LRAWCLIP=65;RRAWCLIP=46;AF_CLIP=35;AF_FMAP=100;AF_DISC=230;AF_CONCORDNT=650;LDRC=13;LDNRC=0;RDRC=42;RDNRC=1;LCOV=138.15;RCOV=188.575;LD_AKR_RC=0;LD_AKR_NRC=13;RD_AKR_RC=41;RD_AKR_NRC=2;LC_CLUSTER=5747:5809;RC_CLUSTER=5978:5983;LD_CLUSTER=5654.0:5758.5;RD_CLUSTER=5654.0:5797.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:29:55:42:9:26:14:57:61:58:16:16:68:25:69;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr15	27930644	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=335;END=27930658;TSD=+GCTTGCCAACTCTT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.18421052631578946;LCLIP=14;RCLIP=9;LDISC=18;RDISC=12;LPOLYA=0;RPOLYA=9;LRAWCLIP=53;RRAWCLIP=46;AF_CLIP=21;AF_FMAP=93;AF_DISC=220;AF_CONCORDNT=661;LDRC=0;LDNRC=18;RDRC=1;RDNRC=11;LCOV=91.565;RCOV=87.405;LD_AKR_RC=0;LD_AKR_NRC=18;RD_AKR_RC=12;RD_AKR_NRC=0;LC_CLUSTER=5684:5709;RC_CLUSTER=6018:6019;LD_CLUSTER=5806.0:6030.5;RD_CLUSTER=5747.5:5966.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:85:4:36:29:87:29:87:66:11;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_23.1;GENE_INFO=intron:ENSG00000104044.16:OCA2	GT	0/1
chr15	39702423	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=56589917;END=39702423;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr12:56595967-56596139;STRAND=+;AF=0.5689655172413793;LCLIP=80;RCLIP=0;LDISC=54;RDISC=32;LPOLYA=43;RPOLYA=0;LRAWCLIP=72;RRAWCLIP=71;AF_CLIP=33;AF_FMAP=25;AF_DISC=123;AF_CONCORDNT=83;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=101.92500000000001;RCOV=186.485;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=56595967:56595967;RD_CLUSTER=56596139:56596139;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:72:39:66:50:42:27:71:46:104:33;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_31.0;GENE_INFO=intron:ENSG00000150667.8:FSIP1	GT	0/1
chr15	47215131	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5946;END=47215145;TSD=+TTCAATTGCATTTA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.1926605504587156;LCLIP=15;RCLIP=11;LDISC=26;RDISC=29;LPOLYA=0;RPOLYA=11;LRAWCLIP=56;RRAWCLIP=51;AF_CLIP=21;AF_FMAP=88;AF_DISC=236;AF_CONCORDNT=659;LDRC=0;LDNRC=26;RDRC=0;RDNRC=29;LCOV=86.17;RCOV=92.13499999999999;LD_AKR_RC=0;LD_AKR_NRC=26;RD_AKR_RC=29;RD_AKR_NRC=0;LC_CLUSTER=44:75;RC_CLUSTER=5981:5990;LD_CLUSTER=5562.5:5995.0;RD_CLUSTER=66.0:308.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:6:32:39:52:59:63:53:67:67:67;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000137872.17:SEMA6D	GT	0/1
chr15	50897103	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=751;END=50897115;TSD=+GGAAGAGTTATA;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=chr1:118852352-118858380~0~118858382-118858449;STRAND=+;AF=0.13402061855670103;LCLIP=10;RCLIP=3;LDISC=19;RDISC=7;LPOLYA=10;RPOLYA=0;LRAWCLIP=54;RRAWCLIP=59;AF_CLIP=13;AF_FMAP=84;AF_DISC=229;AF_CONCORDNT=629;LDRC=6;LDNRC=13;RDRC=6;RDNRC=1;LCOV=60.42;RCOV=65.885;LD_AKR_RC=2;LD_AKR_NRC=17;RD_AKR_RC=7;RD_AKR_NRC=0;LC_CLUSTER=6016:6047;RC_CLUSTER=5483:5484;LD_CLUSTER=5299.0:5902.5;RD_CLUSTER=5651.5:6094.5;NINDEL=4;CLIP_LEN=5:5:5:23:4:16:42:31:22:12:85;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000273674.6:ENSG00000273674	GT	0/1
chr15	55958936	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5985;END=55958954;TSD=+AAAACTTTAATTGATGTC;TSDLEN=18;SUBTYPE=two_side_tprt_both;TD_SRC=chr17:70464980~sibling;STRAND=+;AF=0.2857142857142857;LCLIP=9;RCLIP=29;LDISC=31;RDISC=13;LPOLYA=9;RPOLYA=0;LRAWCLIP=44;RRAWCLIP=54;AF_CLIP=36;AF_FMAP=90;AF_DISC=208;AF_CONCORDNT=643;LDRC=30;LDNRC=1;RDRC=13;RDNRC=0;LCOV=92.04;RCOV=61.475;LD_AKR_RC=1;LD_AKR_NRC=30;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=6040:6069;RC_CLUSTER=12:76;LD_CLUSTER=65.0:489.5;RD_CLUSTER=5813.5:6092.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:16:22:24:37:37:52:54:54:59:61:64:64:71:72:73;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_26.6;GENE_INFO=intron:ENSG00000069869.17:NEDD4	GT	0/1
chr15	61036759	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1469;END=61036775;TSD=+TAGAGCAGAGATTTCT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.31851851851851853;LCLIP=32;RCLIP=9;LDISC=17;RDISC=46;LPOLYA=0;RPOLYA=9;LRAWCLIP=69;RRAWCLIP=45;AF_CLIP=43;AF_FMAP=92;AF_DISC=227;AF_CONCORDNT=652;LDRC=0;LDNRC=17;RDRC=1;RDNRC=45;LCOV=83.25999999999999;RCOV=123.86;LD_AKR_RC=2;LD_AKR_NRC=15;RD_AKR_RC=45;RD_AKR_NRC=1;LC_CLUSTER=4559:4624;RC_CLUSTER=6019:6028;LD_CLUSTER=5660.5:6053.5;RD_CLUSTER=4613.0:4934.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:67:23:62:13:6:5:3:44:4:62:18:41:13:41:18:18:47:47:47:4:4:44:4;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000069667.16:RORA	GT	0/1
chr15	100390938	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1058;END=100390956;TSD=+TCTAAGTGTATAAATTTA;TSDLEN=18;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.41007194244604317;LCLIP=53;RCLIP=15;LDISC=31;RDISC=91;LPOLYA=1;RPOLYA=15;LRAWCLIP=82;RRAWCLIP=53;AF_CLIP=57;AF_FMAP=82;AF_DISC=260;AF_CONCORDNT=625;LDRC=1;LDNRC=30;RDRC=83;RDNRC=8;LCOV=44.45;RCOV=110.185;LD_AKR_RC=0;LD_AKR_NRC=31;RD_AKR_RC=88;RD_AKR_NRC=3;LC_CLUSTER=4960:5014;RC_CLUSTER=5983:6018;LD_CLUSTER=5524.0:6025.0;RD_CLUSTER=4682.0:5329.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:53:63:58:34:21:40:44:44:23:44:16:44:16:64:33:56:53:56:53:16:53:10:6:44:44:6:56:16:53:44:41:56;INS_INV=5-prime-inversion;REF_REP=Fall_in_LINE1_copy_32.2;GENE_INFO=intron:ENSG00000259430.2:CERS3-AS1	GT	0/1
chr16	6743825	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1375;END=6743829;TSD=-ATTT;TSDLEN=4;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.1834862385321101;LCLIP=9;RCLIP=12;LDISC=34;RDISC=25;LPOLYA=9;RPOLYA=0;LRAWCLIP=56;RRAWCLIP=45;AF_CLIP=20;AF_FMAP=89;AF_DISC=236;AF_CONCORDNT=638;LDRC=33;LDNRC=1;RDRC=25;RDNRC=0;LCOV=86.45;RCOV=78.84;LD_AKR_RC=1;LD_AKR_NRC=33;RD_AKR_RC=25;RD_AKR_NRC=0;LC_CLUSTER=5997:6010;RC_CLUSTER=4635:4676;LD_CLUSTER=4671.0:5144.0;RD_CLUSTER=5716.0:6024.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:36:30:39:34:37:18:38:17:50:50:50:50;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_20.4;GENE_INFO=intron:ENSG00000078328.23:RBFOX1	GT	0/1
chr16	70063691	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=14971189;END=70063691;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr16:14977239-14977257;STRAND=+;AF=0.47058823529411764;LCLIP=17;RCLIP=0;LDISC=9;RDISC=10;LPOLYA=11;RPOLYA=0;LRAWCLIP=72;RRAWCLIP=60;AF_CLIP=24;AF_FMAP=27;AF_DISC=110;AF_CONCORDNT=95;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=30.955;RCOV=104.945;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=14977239:14977239;RD_CLUSTER=14977257:14977257;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:4:3:5:8:17:3:4:60:29:28:7:65;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000290709.1:ENSG00000290709/intron:ENSG00000255185.7:PDXDC2P/intron:ENSG00000196696.14:PDXDC2P-NPIPB14P	GT	0/1
chr17	21763039	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=21318693;END=21763039;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr17:21324743-21325452;STRAND=+;AF=0.5283018867924528;LCLIP=37;RCLIP=0;LDISC=13;RDISC=18;LPOLYA=9;RPOLYA=0;LRAWCLIP=71;RRAWCLIP=71;AF_CLIP=28;AF_FMAP=25;AF_DISC=97;AF_CONCORDNT=96;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=92.11;RCOV=147.225;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=21324743:21324743;RD_CLUSTER=21325452:21325452;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:3:62:5:32:121:107:124;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_23.5;GENE_INFO=not_gene_region	GT	0/1
chr17	22147380	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=63033028;END=22147380;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr13:63039078-63039368;STRAND=+;AF=0.07142857142857142;LCLIP=26;RCLIP=0;LDISC=50;RDISC=60;LPOLYA=4;RPOLYA=0;LRAWCLIP=61;RRAWCLIP=58;AF_CLIP=4;AF_FMAP=52;AF_DISC=99;AF_CONCORDNT=192;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=176.67;RCOV=196.3;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=63039078:63039078;RD_CLUSTER=63039368:63039368;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:25;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_22.6;GENE_INFO=intron:ENSG00000290919.1:UBBP4	GT	0/1
chr17	35945143	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1578;END=35945162;TSD=+AAAGTATGTCCTACCCTCA;TSDLEN=19;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.12631578947368421;LCLIP=4;RCLIP=11;LDISC=22;RDISC=8;LPOLYA=4;RPOLYA=0;LRAWCLIP=49;RRAWCLIP=45;AF_CLIP=12;AF_FMAP=83;AF_DISC=217;AF_CONCORDNT=625;LDRC=21;LDNRC=1;RDRC=8;RDNRC=0;LCOV=68.075;RCOV=42.44;LD_AKR_RC=1;LD_AKR_NRC=21;RD_AKR_RC=7;RD_AKR_NRC=1;LC_CLUSTER=5987:6001;RC_CLUSTER=4423:4448;LD_CLUSTER=4487.5:4983.5;RD_CLUSTER=5770.0:6034.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:20:35:55;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=down_stream:ENSG00000275722.5:LYZL6	GT	0/1
chr18	15095248	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5983;END=15095263;TSD=+GAGGACACTATTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=chr2:131879638~sibling;STRAND=-;AF=0.17757009345794392;LCLIP=10;RCLIP=3;LDISC=8;RDISC=18;LPOLYA=0;RPOLYA=3;LRAWCLIP=51;RRAWCLIP=45;AF_CLIP=19;AF_FMAP=88;AF_DISC=216;AF_CONCORDNT=656;LDRC=0;LDNRC=8;RDRC=2;RDNRC=16;LCOV=67.83;RCOV=72.77;LD_AKR_RC=0;LD_AKR_NRC=8;RD_AKR_RC=16;RD_AKR_NRC=2;LC_CLUSTER=50:68;RC_CLUSTER=6005:6011;LD_CLUSTER=5660.5:5993.5;RD_CLUSTER=67.0:345.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:12:74:74:75:32;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000263635.1:ENSG00000263635	GT	0/1
chr18	31152938	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5028;END=31152955;TSD=+TGCAAGTGGTGTTTCTT;TSDLEN=17;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.2892561983471074;LCLIP=16;RCLIP=16;LDISC=17;RDISC=28;LPOLYA=0;RPOLYA=16;LRAWCLIP=58;RRAWCLIP=45;AF_CLIP=35;AF_FMAP=86;AF_DISC=213;AF_CONCORDNT=633;LDRC=0;LDNRC=17;RDRC=1;RDNRC=27;LCOV=57.87;RCOV=89.3;LD_AKR_RC=0;LD_AKR_NRC=17;RD_AKR_RC=27;RD_AKR_NRC=1;LC_CLUSTER=1064:1075;RC_CLUSTER=6047:6092;LD_CLUSTER=5401.0:6049.5;RD_CLUSTER=5347.5:5771.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:61:35:80:43:77:38:5:69:57:38:65:84:38:23:65;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000265888.4:DSCAS/intron:ENSG00000134765.10:DSC1	GT	0/1
chr18	52571371	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=429;END=52571387;TSD=+CAGTGTTTCTATTGTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.23076923076923078;LCLIP=22;RCLIP=22;LDISC=32;RDISC=25;LPOLYA=0;RPOLYA=22;LRAWCLIP=51;RRAWCLIP=58;AF_CLIP=27;AF_FMAP=90;AF_DISC=222;AF_CONCORDNT=644;LDRC=0;LDNRC=32;RDRC=0;RDNRC=25;LCOV=84.25;RCOV=98.035;LD_AKR_RC=1;LD_AKR_NRC=31;RD_AKR_RC=25;RD_AKR_NRC=0;LC_CLUSTER=5596:5650;RC_CLUSTER=5995:6025;LD_CLUSTER=5684.0:6035.0;RD_CLUSTER=5646.0:5786.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:57:19:66:42:68:24:33:25;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000187323.12:DCC	GT	0/1
chr18	55587337	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=32910367;END=55587337;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr2:32916417-32916477;STRAND=+;AF=0.4897959183673469;LCLIP=47;RCLIP=0;LDISC=7;RDISC=7;LPOLYA=20;RPOLYA=0;LRAWCLIP=78;RRAWCLIP=65;AF_CLIP=24;AF_FMAP=25;AF_DISC=123;AF_CONCORDNT=91;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=61.155;RCOV=86.07;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=32916417:32916417;RD_CLUSTER=32916477:32916477;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:71:77:29:107:77;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=UTR5:ENST00000638154.3:TCF4	GT	0/1
chr18	57236755	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=0;END=57236755;TSD=NULL;TSDLEN=-1;SUBTYPE=one_side_and_half_transduction;TD_SRC=chr6:160100725~sibling;STRAND=+;AF=0.42;LCLIP=6;RCLIP=0;LDISC=0;RDISC=8;LPOLYA=5;RPOLYA=0;LRAWCLIP=40;RRAWCLIP=45;AF_CLIP=21;AF_FMAP=29;AF_DISC=105;AF_CONCORDNT=135;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=78.96888888888888;RCOV=58.28;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=-1:-1;NINDEL=3;CLIP_LEN=34:5:6:19:25:25:41:41:24:29:32:28:48:69:27:110:106:17:121:69:118;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr18	68905256	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=75315460;END=68905256;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr6:75321510-75321552;STRAND=+;AF=0.6216216216216216;LCLIP=42;RCLIP=0;LDISC=9;RDISC=15;LPOLYA=15;RPOLYA=0;LRAWCLIP=80;RRAWCLIP=74;AF_CLIP=46;AF_FMAP=28;AF_DISC=134;AF_CONCORDNT=84;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=52.095;RCOV=92.11;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=75321510:75321510;RD_CLUSTER=75321552:75321552;NINDEL=3;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:56:7:53:27:6:54:4:5:45:38:63:38:19:28:58:63:23:57:58:57;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_19.9;GENE_INFO=intron:ENSG00000150636.17:CCDC102B	GT	0/1
chr18	72854814	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=690;END=72854828;TSD=+CAAAATATCTTATT;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.16346153846153846;LCLIP=5;RCLIP=12;LDISC=2;RDISC=20;LPOLYA=0;RPOLYA=12;LRAWCLIP=48;RRAWCLIP=52;AF_CLIP=17;AF_FMAP=87;AF_DISC=222;AF_CONCORDNT=647;LDRC=0;LDNRC=2;RDRC=6;RDNRC=14;LCOV=60.41;RCOV=55.715;LD_AKR_RC=1;LD_AKR_NRC=1;RD_AKR_RC=18;RD_AKR_NRC=2;LC_CLUSTER=5346:5363;RC_CLUSTER=6017:6036;LD_CLUSTER=5953.5:6062.5;RD_CLUSTER=5304.0:5619.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:9:16:18:33:29:28:60:63:63:65:73:79;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_25.6;GENE_INFO=down_stream:ENSG00000263750.1:MIR548AV/intron:ENSG00000166342.19:NETO1	GT	0/1
chr19	27377676	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=239;END=27377696;TSD=+AAAAACTACCCAGAAGCATT;TSDLEN=20;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.2158273381294964;LCLIP=12;RCLIP=18;LDISC=20;RDISC=8;LPOLYA=12;RPOLYA=0;LRAWCLIP=73;RRAWCLIP=68;AF_CLIP=30;AF_FMAP=109;AF_DISC=238;AF_CONCORDNT=723;LDRC=9;LDNRC=11;RDRC=8;RDNRC=0;LCOV=178.1;RCOV=209.48;LD_AKR_RC=4;LD_AKR_NRC=16;RD_AKR_RC=8;RD_AKR_NRC=0;LC_CLUSTER=6087:6104;RC_CLUSTER=5865:5902;LD_CLUSTER=5853.0:5995.5;RD_CLUSTER=5220.5:6015.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:2:4:13:14:24:24:32:30:32:36:50:50;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr19	54744885	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=54850178;END=54744885;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr19:-1-54856228;STRAND=+;AF=0.24242424242424243;LCLIP=17;RCLIP=0;LDISC=8;RDISC=5;LPOLYA=6;RPOLYA=0;LRAWCLIP=62;RRAWCLIP=56;AF_CLIP=8;AF_FMAP=25;AF_DISC=102;AF_CONCORDNT=79;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=61.155;RCOV=77.01;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=54856228:54856228;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:4;INS_INV=Not-5prime-inversion;REF_REP=Right_is_LINE1_copy_19.9;GENE_INFO=intron:ENSG00000215765.3:ENSG00000215765/intron:ENSG00000243772.8:KIR2DL3	GT	0/1
chr20	17389138	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1464;END=17389152;TSD=+AAAAGTTAACTCTA;TSDLEN=14;SUBTYPE=two_side_tprt_both;TD_SRC=chr12:94886149~sibling;STRAND=+;AF=0.19626168224299065;LCLIP=2;RCLIP=18;LDISC=44;RDISC=4;LPOLYA=2;RPOLYA=0;LRAWCLIP=46;RRAWCLIP=53;AF_CLIP=21;AF_FMAP=86;AF_DISC=221;AF_CONCORDNT=652;LDRC=41;LDNRC=3;RDRC=4;RDNRC=0;LCOV=88.725;RCOV=65.695;LD_AKR_RC=3;LD_AKR_NRC=41;RD_AKR_RC=4;RD_AKR_NRC=0;LC_CLUSTER=6037:6037;RC_CLUSTER=4539:4583;LD_CLUSTER=4586.0:4781.5;RD_CLUSTER=5898.0:6092.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:3:17:28:28:28:30:54:54:61:61:61:61:61;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000125851.10:PCSK2	GT	0/1
chr20	30937827	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=4375;END=30937827;TSD=NULL;TSDLEN=-1;SUBTYPE=one_half_side_tprt;TD_SRC=not_transduction;STRAND=+;AF=0.10185185185185185;LCLIP=6;RCLIP=0;LDISC=25;RDISC=13;LPOLYA=3;RPOLYA=0;LRAWCLIP=50;RRAWCLIP=42;AF_CLIP=11;AF_FMAP=97;AF_DISC=240;AF_CONCORDNT=667;LDRC=3;LDNRC=22;RDRC=13;RDNRC=0;LCOV=117.345;RCOV=128.81;LD_AKR_RC=1;LD_AKR_NRC=24;RD_AKR_RC=13;RD_AKR_NRC=0;LC_CLUSTER=5169:5170;RC_CLUSTER=-1:-1;LD_CLUSTER=1638.5:2447.5;RD_CLUSTER=5760.5:6013.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:20:38:10:15;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr21	13017861	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=410;END=13017876;TSD=+TTGACCTTGTTTCTT;TSDLEN=15;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.20869565217391303;LCLIP=9;RCLIP=16;LDISC=13;RDISC=15;LPOLYA=0;RPOLYA=16;LRAWCLIP=64;RRAWCLIP=50;AF_CLIP=24;AF_FMAP=91;AF_DISC=234;AF_CONCORDNT=656;LDRC=0;LDNRC=13;RDRC=0;RDNRC=15;LCOV=102.75999999999999;RCOV=106.025;LD_AKR_RC=1;LD_AKR_NRC=12;RD_AKR_RC=15;RD_AKR_NRC=0;LC_CLUSTER=5626:5646;RC_CLUSTER=5976:6036;LD_CLUSTER=5665.0:6003.0;RD_CLUSTER=5660.0:5818.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:5:10:15:20:41:70:77:89;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=down_stream:ENSG00000229306.1:ENSG00000229306	GT	0/1
chr21	21885567	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6007;END=21885583;TSD=+TTGAAAAAATATTTTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.14150943396226415;LCLIP=10;RCLIP=2;LDISC=7;RDISC=27;LPOLYA=0;RPOLYA=3;LRAWCLIP=46;RRAWCLIP=41;AF_CLIP=15;AF_FMAP=91;AF_DISC=208;AF_CONCORDNT=643;LDRC=0;LDNRC=7;RDRC=1;RDNRC=26;LCOV=47.86;RCOV=59.989999999999995;LD_AKR_RC=0;LD_AKR_NRC=7;RD_AKR_RC=26;RD_AKR_NRC=1;LC_CLUSTER=12:26;RC_CLUSTER=6017:6019;LD_CLUSTER=5851.0:6034.0;RD_CLUSTER=64.0:416.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:25:3;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr21	22253870	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5973;END=22253885;TSD=+ACCTATTTTCTTTTC;TSDLEN=15;SUBTYPE=one_half_side_tprt_both;TD_SRC=chr21:27921015~sibling;STRAND=-;AF=0.2018348623853211;LCLIP=16;RCLIP=11;LDISC=4;RDISC=32;LPOLYA=0;RPOLYA=11;LRAWCLIP=58;RRAWCLIP=46;AF_CLIP=22;AF_FMAP=87;AF_DISC=237;AF_CONCORDNT=636;LDRC=2;LDNRC=2;RDRC=0;RDNRC=32;LCOV=64.41;RCOV=90.78;LD_AKR_RC=0;LD_AKR_NRC=4;RD_AKR_RC=32;RD_AKR_NRC=0;LC_CLUSTER=13:64;RC_CLUSTER=6016:6027;LD_CLUSTER=-1:-1;RD_CLUSTER=77.5:323.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:22:30:56:3:15:17:17:62:17:17:17:17:18;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000226043.2:ENSG00000226043	GT	0/1
chr21	27696854	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=2164;END=27696867;TSD=+AAATGTAAATCTG;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.3333333333333333;LCLIP=21;RCLIP=35;LDISC=50;RDISC=45;LPOLYA=21;RPOLYA=0;LRAWCLIP=61;RRAWCLIP=66;AF_CLIP=41;AF_FMAP=82;AF_DISC=266;AF_CONCORDNT=631;LDRC=3;LDNRC=47;RDRC=43;RDNRC=2;LCOV=71.58;RCOV=67.98;LD_AKR_RC=3;LD_AKR_NRC=47;RD_AKR_RC=42;RD_AKR_NRC=3;LC_CLUSTER=6017:6048;RC_CLUSTER=3884:3946;LD_CLUSTER=3297.5:3933.0;RD_CLUSTER=5619.5:6055.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:2:2:16:22:25:29:33:38:38:38:45:45:45:45:53:53:53:54:61:68:70:70:70:70:70:74;INS_INV=5-prime-inversion;REF_REP=Left_is_LINE1_copy_11.1;GENE_INFO=not_gene_region	GT	0/1
chr22	10956015	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=29078922;END=10956015;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr20:-1-29084972;STRAND=+;AF=0.5;LCLIP=47;RCLIP=0;LDISC=10;RDISC=67;LPOLYA=18;RPOLYA=0;LRAWCLIP=79;RRAWCLIP=60;AF_CLIP=25;AF_FMAP=25;AF_DISC=102;AF_CONCORDNT=93;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=108.72;RCOV=213.665;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=29084972:29084972;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:2:21:24:42:46:63:5;INS_INV=Not-5prime-inversion;REF_REP=Left_is_LINE1_copy_25.8;GENE_INFO=intron:ENSG00000283047.1:FRG1FP	GT	0/1
chr22	16534434	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=91982558;END=16534434;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr10:91988608-91990307;STRAND=+;AF=0.375;LCLIP=38;RCLIP=0;LDISC=43;RDISC=25;LPOLYA=6;RPOLYA=0;LRAWCLIP=65;RRAWCLIP=56;AF_CLIP=15;AF_FMAP=25;AF_DISC=107;AF_CONCORDNT=87;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=82.295;RCOV=114.005;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=91988608:91988608;RD_CLUSTER=91990307:91990307;NINDEL=3;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:13:10:3:5;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr22	16765164	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=6006;END=16765175;TSD=+AAAGAACTCCT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.1834862385321101;LCLIP=10;RCLIP=15;LDISC=25;RDISC=29;LPOLYA=9;RPOLYA=0;LRAWCLIP=48;RRAWCLIP=48;AF_CLIP=20;AF_FMAP=89;AF_DISC=215;AF_CONCORDNT=649;LDRC=25;LDNRC=0;RDRC=25;RDNRC=4;LCOV=88.32;RCOV=80.43;LD_AKR_RC=1;LD_AKR_NRC=24;RD_AKR_RC=27;RD_AKR_NRC=2;LC_CLUSTER=6005:6019;RC_CLUSTER=13:24;LD_CLUSTER=65.0:526.5;RD_CLUSTER=5470.0:6029.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:8:14:19:21:21:21:59;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_16.4;GENE_INFO=not_gene_region	GT	0/1
chr22	22131973	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5945;END=22131986;TSD=+TTGCATATTTCTT;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.15454545454545454;LCLIP=4;RCLIP=7;LDISC=20;RDISC=24;LPOLYA=0;RPOLYA=7;LRAWCLIP=54;RRAWCLIP=48;AF_CLIP=17;AF_FMAP=93;AF_DISC=229;AF_CONCORDNT=654;LDRC=1;LDNRC=19;RDRC=0;RDNRC=24;LCOV=66.28;RCOV=84.295;LD_AKR_RC=1;LD_AKR_NRC=19;RD_AKR_RC=24;RD_AKR_NRC=0;LC_CLUSTER=35:54;RC_CLUSTER=5963:5980;LD_CLUSTER=5576.5:6008.5;RD_CLUSTER=67.0:550.5;NINDEL=13;CLIP_LEN=5:5:5:23:4:16:42:31:32:67:36:9:27:66:27:26:27;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chr22	22349142	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=72263568;END=22349142;TSD=NULL;TSDLEN=-1;SUBTYPE=orphan_or_sibling_transduction;TD_SRC=chr4:-1-72269618;STRAND=+;AF=0.5161290322580645;LCLIP=74;RCLIP=0;LDISC=7;RDISC=19;LPOLYA=20;RPOLYA=0;LRAWCLIP=73;RRAWCLIP=64;AF_CLIP=48;AF_FMAP=45;AF_DISC=114;AF_CONCORDNT=138;LDRC=0;LDNRC=0;RDRC=0;RDNRC=0;LCOV=107.965;RCOV=199.32;LD_AKR_RC=0;LD_AKR_NRC=0;RD_AKR_RC=0;RD_AKR_NRC=0;LC_CLUSTER=-1:-1;RC_CLUSTER=-1:-1;LD_CLUSTER=-1:-1;RD_CLUSTER=72269618:72269618;NINDEL=0;CLIP_LEN=79:27:27:30:57:111:27:22:24:95:67:16:51:16:81:71:54:6:71:24:91:16:24:38:6:11:50:21:102:80:46:70:51:29:72:73:16:42:56:26:14:65:95:63:48:45:44:9;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=down_stream:ENSG00000232515.1:ENSG00000232515	GT	0/1
chr22	43928709	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1046;END=43928725;TSD=+TGCAAAGGGCATTTTC;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.22580645161290322;LCLIP=25;RCLIP=4;LDISC=14;RDISC=34;LPOLYA=0;RPOLYA=4;LRAWCLIP=53;RRAWCLIP=44;AF_CLIP=28;AF_FMAP=96;AF_DISC=221;AF_CONCORDNT=655;LDRC=0;LDNRC=14;RDRC=1;RDNRC=33;LCOV=88.67;RCOV=133.195;LD_AKR_RC=0;LD_AKR_NRC=14;RD_AKR_RC=32;RD_AKR_NRC=2;LC_CLUSTER=4978:5045;RC_CLUSTER=6019:6024;LD_CLUSTER=5620.5:6053.0;RD_CLUSTER=5027.0:5319.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:70:59:27:26:27:27:27;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000100344.11:PNPLA3	GT	0/1
chrX	14133882	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1022;END=14133893;TSD=+TCTCTTTTCTT;TSDLEN=11;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.20952380952380953;LCLIP=18;RCLIP=17;LDISC=24;RDISC=29;LPOLYA=2;RPOLYA=17;LRAWCLIP=47;RRAWCLIP=48;AF_CLIP=22;AF_FMAP=83;AF_DISC=215;AF_CONCORDNT=620;LDRC=0;LDNRC=24;RDRC=1;RDNRC=28;LCOV=44.21;RCOV=44.59;LD_AKR_RC=0;LD_AKR_NRC=24;RD_AKR_RC=28;RD_AKR_NRC=1;LC_CLUSTER=4990:5054;RC_CLUSTER=5969:6012;LD_CLUSTER=5758.5:6016.5;RD_CLUSTER=5040.0:5249.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:22:27:41:30;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chrX	67762911	.	G	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=546;END=67762929;TSD=+GGACTTAGGTTATATTTC;TSDLEN=18;SUBTYPE=one_half_side_tprt_both;TD_SRC=chr16:81086165~sibling;STRAND=-;AF=0.28695652173913044;LCLIP=28;RCLIP=2;LDISC=1;RDISC=24;LPOLYA=0;RPOLYA=2;LRAWCLIP=55;RRAWCLIP=39;AF_CLIP=33;AF_FMAP=82;AF_DISC=224;AF_CONCORDNT=617;LDRC=0;LDNRC=1;RDRC=2;RDNRC=22;LCOV=18.310000000000002;RCOV=49.504999999999995;LD_AKR_RC=1;LD_AKR_NRC=0;RD_AKR_RC=24;RD_AKR_NRC=0;LC_CLUSTER=5478:5524;RC_CLUSTER=6017:6019;LD_CLUSTER=-1:-1;RD_CLUSTER=5504.0:5828.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:18:9:72:33:68:30:39:4:69:69:71;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_17.3;GENE_INFO=not_gene_region	GT	0/1
chrX	69127417	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=385;END=69127433;TSD=+AGAAATCCTTGACCTG;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=.;AF=0.2782608695652174;LCLIP=19;RCLIP=17;LDISC=21;RDISC=36;LPOLYA=20;RPOLYA=1;LRAWCLIP=61;RRAWCLIP=49;AF_CLIP=32;AF_FMAP=83;AF_DISC=234;AF_CONCORDNT=626;LDRC=21;LDNRC=0;RDRC=33;RDNRC=3;LCOV=55.75;RCOV=55.245000000000005;LD_AKR_RC=1;LD_AKR_NRC=20;RD_AKR_RC=35;RD_AKR_NRC=1;LC_CLUSTER=5982:6043;RC_CLUSTER=5658:5715;LD_CLUSTER=5706.0:5998.0;RD_CLUSTER=5724.5:6021.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:13:82:96:59:59:96:96:21:59:96:96:59:21:59:98;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chrX	103108245	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=620;END=103108261;TSD=+AAAAGATAAAACTACA;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=+;AF=0.18;LCLIP=20;RCLIP=16;LDISC=34;RDISC=30;LPOLYA=20;RPOLYA=0;LRAWCLIP=58;RRAWCLIP=50;AF_CLIP=18;AF_FMAP=82;AF_DISC=238;AF_CONCORDNT=620;LDRC=3;LDNRC=31;RDRC=30;RDNRC=0;LCOV=42.855000000000004;RCOV=48.510000000000005;LD_AKR_RC=3;LD_AKR_NRC=31;RD_AKR_RC=30;RD_AKR_NRC=0;LC_CLUSTER=6012:6067;RC_CLUSTER=5447:5508;LD_CLUSTER=5004.0:5491.5;RD_CLUSTER=5572.5:6060.5;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:7:7:17:21:33:33:33:58:68:68;INS_INV=5-prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
chrX	111986330	.	A	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=5991;END=111986343;TSD=+ATCCCAAATTCTT;TSDLEN=13;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.24770642201834864;LCLIP=15;RCLIP=11;LDISC=25;RDISC=35;LPOLYA=0;RPOLYA=11;LRAWCLIP=53;RRAWCLIP=44;AF_CLIP=27;AF_FMAP=82;AF_DISC=235;AF_CONCORDNT=626;LDRC=0;LDNRC=25;RDRC=1;RDNRC=34;LCOV=48.730000000000004;RCOV=47.17;LD_AKR_RC=0;LD_AKR_NRC=25;RD_AKR_RC=35;RD_AKR_NRC=0;LC_CLUSTER=28:49;RC_CLUSTER=5996:6019;LD_CLUSTER=5656.0:6016.0;RD_CLUSTER=65.0:529.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:58:14:50:50:8:50:50:50:50:42;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=intron:ENSG00000072315.4:TRPC5	GT	0/1
chrX	123531005	.	T	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=1662;END=123531021;TSD=+TATATTTCTTTCTTTT;TSDLEN=16;SUBTYPE=two_side_tprt_both;TD_SRC=not_transduction;STRAND=-;AF=0.16666666666666666;LCLIP=11;RCLIP=4;LDISC=15;RDISC=15;LPOLYA=0;RPOLYA=5;LRAWCLIP=53;RRAWCLIP=40;AF_CLIP=17;AF_FMAP=85;AF_DISC=209;AF_CONCORDNT=629;LDRC=0;LDNRC=15;RDRC=1;RDNRC=14;LCOV=30.445;RCOV=45.620000000000005;LD_AKR_RC=1;LD_AKR_NRC=14;RD_AKR_RC=14;RD_AKR_NRC=1;LC_CLUSTER=4357:4412;RC_CLUSTER=6019:6019;LD_CLUSTER=5659.5:6040.5;RD_CLUSTER=4408.0:4881.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:4:21:17:5:7:32:5:58:4:39;INS_INV=Not-5prime-inversion;REF_REP=Fall_in_LINE1_copy_9.1;GENE_INFO=not_gene_region	GT	0/1
chrX	130391295	.	C	<INS:ME:LINE1>	.	PASS	SVTYPE=INS:ME:LINE1;SVLEN=960;END=130391307;TSD=+CACATATCTCTT;TSDLEN=12;SUBTYPE=two_side_tprt_both;TD_SRC=chr9:101681693~sibling;STRAND=-;AF=0.24770642201834864;LCLIP=20;RCLIP=11;LDISC=20;RDISC=37;LPOLYA=0;RPOLYA=11;LRAWCLIP=54;RRAWCLIP=42;AF_CLIP=27;AF_FMAP=82;AF_DISC=220;AF_CONCORDNT=621;LDRC=0;LDNRC=20;RDRC=1;RDNRC=36;LCOV=36.62;RCOV=56.265;LD_AKR_RC=0;LD_AKR_NRC=20;RD_AKR_RC=37;RD_AKR_NRC=0;LC_CLUSTER=5023:5092;RC_CLUSTER=5958:5988;LD_CLUSTER=5676.5:5997.0;RD_CLUSTER=5090.5:5745.0;NINDEL=3;CLIP_LEN=5:5:5:23:4:16:42:31:45:72:12:54:49:66:66:49:80:49:49;INS_INV=Not-5prime-inversion;REF_REP=not_in_LINE1_copy;GENE_INFO=not_gene_region	GT	0/1
