dfh=open('Diff_interaction_runner.sh','r')
commands=[]
for i in dfh:
	commands.append(i)
chro_order=[]
for i in range(1,6):
        chro_order.append('chr'+str(i))
#chro_order.append('chrX')
#chro_order.append('chrY')
#chro_order.append('chrM')
import sys
import os
for i in chro_order:
	rfh=open('Diff_int_100kb_'+i+'.sh','w')
	for a in commands:
		rfh.write('/pbld/netapp/home/dslee/Tools/Python-2.7.12/'+a.replace('${1}',i))
	rfh.close()
#	os.system('qsub -cwd -pe gale 4 -R y -l mem_free=10G,h_vmem=10G,qname=gale.q -V '+'Diff_int_50kb_'+i+'.sh')
	os.system('sh Diff_int_100kb_'+i+'.sh &')