cooler dump -t pixels --header --join ${1}_10kb_contacts.cool > ${1}_10kb_supermatrix.txt &
cooler dump -t pixels --header --join ${2}_10kb_contacts.cool > ${2}_10kb_supermatrix.txt &
wait
python Allc_modifier.py ${1}_10kb_supermatrix.txt &
python Allc_modifier.py ${2}_10kb_supermatrix.txt &
wait
python To_lower_super_matrix.py ${1}_10kb_supermatrix_mod.txt 50000 &
python To_lower_super_matrix.py ${2}_10kb_supermatrix_mod.txt 50000 &
wait
python two_integrated_allc_integrate.py ${1}_50kb_supermatrix_mod.txt ${2}_50kb_supermatrix_mod.txt ${3}
rm ${1}_10kb_supermatrix.txt ${2}_10kb_supermatrix.txt
rm ${1}_10kb_supermatrix_mod.txt ${2}_10kb_supermatrix_mod.txt