#!/bin/sh                                                                                                                                                               

#cooler csort --nproc 2 -c1 2 -p1 3 -c2 4 -p2 5 -o ${2}.sorted ${1} /gale/netapp/scratch2/chongyuan/dslee/Human_Brain_merge/hg19_chrNameLength.txt
#cooler cload pairix /gale/netapp/scratch2/chongyuan/dslee/Human_Brain_merge/hg19.bins.10kb.bed  ${2}.sorted ${2}_10kb_contacts.cool
#cooler balance -p 2 ${2}_10kb_contacts.cool
cooler dump -t pixels --header --join ${2}_10kb_contacts.cool > ${2}_10kb_supermatrix.txt
#cooler zoomify -r 1000,2000,5000,10000,20000,40000,50000,100000,200000,500000,1000000,2000000,5000000,10000000,20000000 --balance ${1}_1kb_contacts.cool
#cooler zoomify -r 50000,100000,200000,500000,1000000,2000000,5000000,10000000,20000000 -o ${1}_50kb_contacts.mcool --balance ${1}_1kb_contacts.cool